Hb_001504_090

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1504: 87041-87883
Sequence    

Annotation

kegg
ID rcu:RCOM_0470980
description zinc finger protein, putative
nr
ID XP_002527314.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q42485
description Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1
trembl
ID B9SMU5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0470980 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12645: 87036-88071
cDNA
(Sanger)
(ID:Location)		 013_P05.ab1: 87036-87720

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_090 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_008147_050 0.1743997307 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
3 Hb_010254_020 0.2001728665 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
4 Hb_002039_050 0.2033801019 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
5 Hb_000421_130 0.2096155572 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
6 Hb_000001_160 0.213265746 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
7 Hb_000366_190 0.2156628893 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
8 Hb_000062_030 0.2181472719 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
9 Hb_120662_010 0.2225536044 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
10 Hb_003043_060 0.2245870899 - - -
11 Hb_001621_160 0.2289157148 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_020805_010 0.2302217077 - - protein with unknown function [Ricinus communis]
13 Hb_001390_010 0.2359414278 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
14 Hb_000749_110 0.2414991282 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
15 Hb_009119_030 0.2421462344 - - GMFP4 [Medicago truncatula]
16 Hb_002374_560 0.2428703237 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
17 Hb_011164_010 0.2433956966 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
18 Hb_030627_040 0.2453649587 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
19 Hb_005608_010 0.2476668884 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
20 Hb_008616_030 0.2489051563 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_090 Hb_001504_090 Hb_008147_050 Hb_008147_050 Hb_001504_090--Hb_008147_050 Hb_010254_020 Hb_010254_020 Hb_001504_090--Hb_010254_020 Hb_002039_050 Hb_002039_050 Hb_001504_090--Hb_002039_050 Hb_000421_130 Hb_000421_130 Hb_001504_090--Hb_000421_130 Hb_000001_160 Hb_000001_160 Hb_001504_090--Hb_000001_160 Hb_000366_190 Hb_000366_190 Hb_001504_090--Hb_000366_190 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_027380_230 Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_000062_030 Hb_000062_030 Hb_008147_050--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_008147_050--Hb_000505_110 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_004884_030 Hb_004884_030 Hb_008147_050--Hb_004884_030 Hb_009119_030 Hb_009119_030 Hb_010254_020--Hb_009119_030 Hb_000027_030 Hb_000027_030 Hb_010254_020--Hb_000027_030 Hb_020805_010 Hb_020805_010 Hb_010254_020--Hb_020805_010 Hb_000130_190 Hb_000130_190 Hb_010254_020--Hb_000130_190 Hb_003043_060 Hb_003043_060 Hb_010254_020--Hb_003043_060 Hb_141132_010 Hb_141132_010 Hb_010254_020--Hb_141132_010 Hb_002039_050--Hb_011164_010 Hb_002999_060 Hb_002999_060 Hb_002039_050--Hb_002999_060 Hb_006745_010 Hb_006745_010 Hb_002039_050--Hb_006745_010 Hb_002039_050--Hb_000062_030 Hb_013394_060 Hb_013394_060 Hb_002039_050--Hb_013394_060 Hb_000421_130--Hb_008147_050 Hb_002875_050 Hb_002875_050 Hb_000421_130--Hb_002875_050 Hb_001390_010 Hb_001390_010 Hb_000421_130--Hb_001390_010 Hb_000207_190 Hb_000207_190 Hb_000421_130--Hb_000207_190 Hb_001195_190 Hb_001195_190 Hb_000421_130--Hb_001195_190 Hb_000001_160--Hb_003043_060 Hb_003243_020 Hb_003243_020 Hb_000001_160--Hb_003243_020 Hb_030627_040 Hb_030627_040 Hb_000001_160--Hb_030627_040 Hb_012340_020 Hb_012340_020 Hb_000001_160--Hb_012340_020 Hb_002518_300 Hb_002518_300 Hb_000001_160--Hb_002518_300 Hb_002326_060 Hb_002326_060 Hb_000001_160--Hb_002326_060 Hb_000366_190--Hb_009119_030 Hb_000366_190--Hb_020805_010 Hb_000366_190--Hb_000062_030 Hb_009485_020 Hb_009485_020 Hb_000366_190--Hb_009485_020 Hb_002320_070 Hb_002320_070 Hb_000366_190--Hb_002320_070 Hb_000749_110 Hb_000749_110 Hb_000366_190--Hb_000749_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81976 18.1837 2.31111 29.5121 67.9723 26.3403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.881911 0.594422 2.16045 4.48339 8.29474

CAGE analysis