Hb_001504_100

Information

Type -
Description -
Location Contig1504: 90475-92424
Sequence    

Annotation

kegg
ID rcu:RCOM_0470990
description hypothetical protein
nr
ID XP_012067530.1
description PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8W487
description Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=2 SV=1
trembl
ID A0A067L416
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27011 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12646: 90607-92456 , PASA_asmbl_12647: 90628-92240
cDNA
(Sanger)
(ID:Location)		 035_H03.ab1: 90784-92456

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_100 0.0 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
2 Hb_002397_070 0.0994704373 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_000167_140 0.1019065161 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
4 Hb_000676_180 0.1031430784 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
5 Hb_129204_030 0.1063275333 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
6 Hb_001245_100 0.1110474581 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
7 Hb_055488_010 0.1113871268 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
8 Hb_004931_090 0.1122086118 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
9 Hb_000008_470 0.1131989692 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
10 Hb_004678_040 0.1139488532 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
11 Hb_000155_200 0.1145812449 - - Rab7 [Hevea brasiliensis]
12 Hb_001246_110 0.1150171236 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
13 Hb_002685_040 0.1151810426 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
14 Hb_001140_060 0.115824994 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
15 Hb_002518_080 0.1161866183 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
16 Hb_000614_160 0.1168123236 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
17 Hb_008221_140 0.1186749084 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
18 Hb_001766_060 0.1188569688 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002256_030 0.1192822342 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004032_360 0.1198620694 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]

Gene co-expression network

sample Hb_001504_100 Hb_001504_100 Hb_002397_070 Hb_002397_070 Hb_001504_100--Hb_002397_070 Hb_000167_140 Hb_000167_140 Hb_001504_100--Hb_000167_140 Hb_000676_180 Hb_000676_180 Hb_001504_100--Hb_000676_180 Hb_129204_030 Hb_129204_030 Hb_001504_100--Hb_129204_030 Hb_001245_100 Hb_001245_100 Hb_001504_100--Hb_001245_100 Hb_055488_010 Hb_055488_010 Hb_001504_100--Hb_055488_010 Hb_003992_240 Hb_003992_240 Hb_002397_070--Hb_003992_240 Hb_007044_060 Hb_007044_060 Hb_002397_070--Hb_007044_060 Hb_004931_090 Hb_004931_090 Hb_002397_070--Hb_004931_090 Hb_004586_170 Hb_004586_170 Hb_002397_070--Hb_004586_170 Hb_000574_160 Hb_000574_160 Hb_002397_070--Hb_000574_160 Hb_000167_140--Hb_129204_030 Hb_008221_140 Hb_008221_140 Hb_000167_140--Hb_008221_140 Hb_000608_370 Hb_000608_370 Hb_000167_140--Hb_000608_370 Hb_000167_140--Hb_000676_180 Hb_008878_030 Hb_008878_030 Hb_000167_140--Hb_008878_030 Hb_001140_060 Hb_001140_060 Hb_000167_140--Hb_001140_060 Hb_004116_190 Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_129204_030--Hb_000608_370 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_001245_100--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001245_100--Hb_027380_050 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_001195_600 Hb_001195_600 Hb_055488_010--Hb_001195_600 Hb_000512_060 Hb_000512_060 Hb_055488_010--Hb_000512_060 Hb_001100_060 Hb_001100_060 Hb_055488_010--Hb_001100_060 Hb_004678_040 Hb_004678_040 Hb_055488_010--Hb_004678_040 Hb_000671_050 Hb_000671_050 Hb_055488_010--Hb_000671_050 Hb_000416_040 Hb_000416_040 Hb_055488_010--Hb_000416_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7325 4.83775 5.05187 5.0287 3.99821 5.506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86267 15.4708 11.2922 2.97813 4.91216

CAGE analysis