Hb_001504_110

Information

Type -
Description -
Location Contig1504: 93641-97952
Sequence    

Annotation

kegg
ID rcu:RCOM_0471000
description hypothetical protein
nr
ID XP_012067531.1
description PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12648: 98527-99114
cDNA
(Sanger)
(ID:Location)		 052_E24.ab1: 98527-99114

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_110 0.0 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
2 Hb_000656_240 0.0540252043 - - proteasome subunit alpha type, putative [Ricinus communis]
3 Hb_000025_620 0.0546022936 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
4 Hb_004116_190 0.0624868048 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
5 Hb_000020_060 0.0672361732 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
6 Hb_000127_180 0.0687765164 - - 40S ribosomal protein S18, putative [Ricinus communis]
7 Hb_000920_110 0.0722885076 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
8 Hb_002995_020 0.0742905844 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
9 Hb_010921_010 0.0745278642 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
10 Hb_015279_010 0.0753468183 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
11 Hb_003018_010 0.0765515592 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
12 Hb_001476_080 0.0785241033 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
13 Hb_002056_050 0.0788146509 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
14 Hb_002686_020 0.0789767541 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
15 Hb_002518_080 0.0798188681 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
16 Hb_001821_010 0.0801275071 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
17 Hb_001221_210 0.0808287036 - - thiF family protein [Populus trichocarpa]
18 Hb_000217_030 0.0811272352 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
19 Hb_003226_100 0.0817586906 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
20 Hb_001484_070 0.0823539411 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001504_110 Hb_001504_110 Hb_000656_240 Hb_000656_240 Hb_001504_110--Hb_000656_240 Hb_000025_620 Hb_000025_620 Hb_001504_110--Hb_000025_620 Hb_004116_190 Hb_004116_190 Hb_001504_110--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_001504_110--Hb_000020_060 Hb_000127_180 Hb_000127_180 Hb_001504_110--Hb_000127_180 Hb_000920_110 Hb_000920_110 Hb_001504_110--Hb_000920_110 Hb_000656_240--Hb_004116_190 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_003226_100 Hb_003226_100 Hb_000025_620--Hb_003226_100 Hb_001780_040 Hb_001780_040 Hb_000025_620--Hb_001780_040 Hb_003018_010 Hb_003018_010 Hb_000025_620--Hb_003018_010 Hb_000025_620--Hb_000127_180 Hb_002056_050 Hb_002056_050 Hb_000025_620--Hb_002056_050 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_000020_060--Hb_002995_020 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_000127_180--Hb_001780_040 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_001832_060 Hb_001832_060 Hb_000127_180--Hb_001832_060 Hb_000920_110--Hb_003226_100 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36739 1.19783 2.12745 1.1836 1.64503 2.3566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52709 5.09249 2.35757 1.79954 1.26765

CAGE analysis