Hb_001504_120

Information

Type -
Description -
Location Contig1504: 98666-99881
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12648: 98527-99114
cDNA
(Sanger)
(ID:Location)		 052_E24.ab1: 98527-99114

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_120 0.0 - - -
2 Hb_138585_110 0.1865441271 - - -
3 Hb_080147_100 0.1990330665 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
4 Hb_000796_250 0.2008963923 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
5 Hb_001433_180 0.2149008522 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
6 Hb_000805_320 0.2194478301 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
7 Hb_002236_050 0.2252182805 - - -
8 Hb_010334_020 0.2268405621 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
9 Hb_001148_030 0.227958954 - - -
10 Hb_002267_080 0.2305505223 - - PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]
11 Hb_004230_040 0.2333593733 - - conserved hypothetical protein [Ricinus communis]
12 Hb_105328_030 0.2344247326 - - Putative retroelement [Oryza sativa Japonica Group]
13 Hb_000260_290 0.2359165041 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
14 Hb_000645_210 0.2361868937 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
15 Hb_002374_380 0.2431146048 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000454_060 0.2442776509 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
17 Hb_007153_040 0.2465413342 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
18 Hb_105602_010 0.2486679475 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
19 Hb_011861_120 0.2491456418 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
20 Hb_002028_220 0.2507531173 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001504_120 Hb_001504_120 Hb_138585_110 Hb_138585_110 Hb_001504_120--Hb_138585_110 Hb_080147_100 Hb_080147_100 Hb_001504_120--Hb_080147_100 Hb_000796_250 Hb_000796_250 Hb_001504_120--Hb_000796_250 Hb_001433_180 Hb_001433_180 Hb_001504_120--Hb_001433_180 Hb_000805_320 Hb_000805_320 Hb_001504_120--Hb_000805_320 Hb_002236_050 Hb_002236_050 Hb_001504_120--Hb_002236_050 Hb_138585_110--Hb_000796_250 Hb_001529_050 Hb_001529_050 Hb_138585_110--Hb_001529_050 Hb_004230_040 Hb_004230_040 Hb_138585_110--Hb_004230_040 Hb_001507_100 Hb_001507_100 Hb_138585_110--Hb_001507_100 Hb_001104_240 Hb_001104_240 Hb_138585_110--Hb_001104_240 Hb_010334_020 Hb_010334_020 Hb_138585_110--Hb_010334_020 Hb_080147_100--Hb_000805_320 Hb_105328_030 Hb_105328_030 Hb_080147_100--Hb_105328_030 Hb_003073_180 Hb_003073_180 Hb_080147_100--Hb_003073_180 Hb_094437_060 Hb_094437_060 Hb_080147_100--Hb_094437_060 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_001117_070 Hb_001117_070 Hb_000796_250--Hb_001117_070 Hb_000318_200 Hb_000318_200 Hb_000796_250--Hb_000318_200 Hb_000260_290 Hb_000260_290 Hb_000796_250--Hb_000260_290 Hb_001049_020 Hb_001049_020 Hb_000796_250--Hb_001049_020 Hb_000796_250--Hb_004230_040 Hb_007382_050 Hb_007382_050 Hb_001433_180--Hb_007382_050 Hb_031862_040 Hb_031862_040 Hb_001433_180--Hb_031862_040 Hb_003623_070 Hb_003623_070 Hb_001433_180--Hb_003623_070 Hb_000140_410 Hb_000140_410 Hb_001433_180--Hb_000140_410 Hb_001433_180--Hb_000260_290 Hb_001433_180--Hb_000796_250 Hb_000805_320--Hb_094437_060 Hb_004242_190 Hb_004242_190 Hb_000805_320--Hb_004242_190 Hb_105602_010 Hb_105602_010 Hb_000805_320--Hb_105602_010 Hb_001258_060 Hb_001258_060 Hb_000805_320--Hb_001258_060 Hb_000805_320--Hb_003073_180 Hb_014894_010 Hb_014894_010 Hb_000805_320--Hb_014894_010 Hb_008948_120 Hb_008948_120 Hb_002236_050--Hb_008948_120 Hb_011861_120 Hb_011861_120 Hb_002236_050--Hb_011861_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_000402_210 Hb_000402_210 Hb_002236_050--Hb_000402_210 Hb_006970_080 Hb_006970_080 Hb_002236_050--Hb_006970_080 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186404 2.53679 0.534189 0.676762 0.371466 1.13428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55073 3.13253 0.820938 5.80913 0

CAGE analysis