Hb_001504_150

Information

Type -
Description -
Location Contig1504: 144141-150545
Sequence    

Annotation

kegg
ID rcu:RCOM_0471020
description Defective in cullin neddylation protein, putative
nr
ID XP_012067535.1
description PREDICTED: DCN1-like protein 4 [Jatropha curcas]
swissprot
ID Q8CCA0
description DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1
trembl
ID A0A067L0J9
description Defective in cullin neddylation protein OS=Jatropha curcas GN=JCGZ_27014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12650: 144257-150460 , PASA_asmbl_12651: 144257-151099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_150 0.0 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
2 Hb_000666_110 0.0590290457 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_005701_040 0.0608727763 - - cellular nucleic acid binding protein, putative [Ricinus communis]
4 Hb_019962_030 0.0726208012 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
5 Hb_007164_020 0.0753125488 - - hypothetical protein glysoja_025872 [Glycine soja]
6 Hb_000205_120 0.0823245911 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
7 Hb_000085_240 0.0845912724 - - fimbrin, putative [Ricinus communis]
8 Hb_001663_110 0.0869165362 - - RNA binding protein, putative [Ricinus communis]
9 Hb_109842_010 0.0869816329 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
10 Hb_000740_070 0.0881091879 - - -
11 Hb_003091_010 0.0895018774 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
12 Hb_010968_010 0.0896332828 - - Golgi snare 12 isoform 1 [Theobroma cacao]
13 Hb_106552_050 0.0897262866 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
14 Hb_007007_050 0.0897363164 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
15 Hb_002784_050 0.0900965586 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
16 Hb_012305_070 0.0905028221 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004678_020 0.091365478 - - PREDICTED: protein YIF1B [Jatropha curcas]
18 Hb_000141_060 0.0918139678 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_000046_300 0.0918213957 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
20 Hb_008887_050 0.0926111786 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_150 Hb_001504_150 Hb_000666_110 Hb_000666_110 Hb_001504_150--Hb_000666_110 Hb_005701_040 Hb_005701_040 Hb_001504_150--Hb_005701_040 Hb_019962_030 Hb_019962_030 Hb_001504_150--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001504_150--Hb_007164_020 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_000085_240 Hb_000085_240 Hb_001504_150--Hb_000085_240 Hb_000666_110--Hb_019962_030 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_004678_020 Hb_004678_020 Hb_005701_040--Hb_004678_020 Hb_012305_070 Hb_012305_070 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_023001_020 Hb_023001_020 Hb_005701_040--Hb_023001_020 Hb_003656_160 Hb_003656_160 Hb_005701_040--Hb_003656_160 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_000085_240--Hb_000666_110 Hb_000621_080 Hb_000621_080 Hb_000085_240--Hb_000621_080 Hb_000085_240--Hb_019962_030 Hb_001439_150 Hb_001439_150 Hb_000085_240--Hb_001439_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
228.61 92.647 97.8216 50.4675 210.873 186.801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.851 117.661 102.781 37.0377 20.8513

CAGE analysis