Hb_001504_170

Information

Type -
Description -
Location Contig1504: 160666-178915
Sequence    

Annotation

kegg
ID rcu:RCOM_0471040
description plant poly(A)+ RNA export protein, putative
nr
ID XP_002527320.1
description plant poly(A)+ RNA export protein, putative [Ricinus communis]
swissprot
ID Q38942
description Protein RAE1 OS=Arabidopsis thaliana GN=RAE1 PE=1 SV=2
trembl
ID B9SMV1
description Plant poly(A)+ RNA export protein, putative OS=Ricinus communis GN=RCOM_0471040 PE=4 SV=1
Gene Ontology
ID GO:0005635
description protein rae1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12656: 160813-178986 , PASA_asmbl_12657: 160943-178927
cDNA
(Sanger)
(ID:Location)		 008_G10.ab1: 162545-178505 , 034_C04.ab1: 162545-178639 , 034_D02.ab1: 162545-178651 , 037_A22.ab1: 160813-176152

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_170 0.0 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
2 Hb_013479_020 0.0770488597 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
3 Hb_002942_030 0.0825219513 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
4 Hb_002955_030 0.0990377845 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003786_110 0.1042563585 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
6 Hb_000345_560 0.1098650042 - - -
7 Hb_000329_610 0.1146146331 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012654_020 0.1149276332 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000933_140 0.115739314 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
10 Hb_000175_520 0.118975179 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002851_060 0.1215875624 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
12 Hb_017134_040 0.1235254992 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
13 Hb_004852_020 0.1237665603 - - -
14 Hb_002835_190 0.1243986085 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_003627_020 0.125189564 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
16 Hb_026048_090 0.1256407614 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002172_030 0.1261342542 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
18 Hb_002681_140 0.1267326877 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
19 Hb_000977_140 0.1289287182 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
20 Hb_003055_050 0.1291432741 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]

Gene co-expression network

sample Hb_001504_170 Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_001504_170--Hb_013479_020 Hb_002942_030 Hb_002942_030 Hb_001504_170--Hb_002942_030 Hb_002955_030 Hb_002955_030 Hb_001504_170--Hb_002955_030 Hb_003786_110 Hb_003786_110 Hb_001504_170--Hb_003786_110 Hb_000345_560 Hb_000345_560 Hb_001504_170--Hb_000345_560 Hb_000329_610 Hb_000329_610 Hb_001504_170--Hb_000329_610 Hb_013479_020--Hb_002942_030 Hb_019654_070 Hb_019654_070 Hb_013479_020--Hb_019654_070 Hb_000028_050 Hb_000028_050 Hb_013479_020--Hb_000028_050 Hb_000085_340 Hb_000085_340 Hb_013479_020--Hb_000085_340 Hb_003627_020 Hb_003627_020 Hb_013479_020--Hb_003627_020 Hb_004852_020 Hb_004852_020 Hb_002942_030--Hb_004852_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_000175_520 Hb_000175_520 Hb_002942_030--Hb_000175_520 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_002955_030--Hb_000345_560 Hb_003055_050 Hb_003055_050 Hb_002955_030--Hb_003055_050 Hb_031042_040 Hb_031042_040 Hb_002955_030--Hb_031042_040 Hb_002955_030--Hb_000028_050 Hb_002377_040 Hb_002377_040 Hb_002955_030--Hb_002377_040 Hb_003786_110--Hb_000329_610 Hb_017134_040 Hb_017134_040 Hb_003786_110--Hb_017134_040 Hb_007178_010 Hb_007178_010 Hb_003786_110--Hb_007178_010 Hb_003786_110--Hb_026048_090 Hb_002067_160 Hb_002067_160 Hb_003786_110--Hb_002067_160 Hb_007992_030 Hb_007992_030 Hb_000345_560--Hb_007992_030 Hb_004502_030 Hb_004502_030 Hb_000345_560--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_000345_560--Hb_003055_050 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_000329_610--Hb_017134_040 Hb_000853_370 Hb_000853_370 Hb_000329_610--Hb_000853_370 Hb_180992_010 Hb_180992_010 Hb_000329_610--Hb_180992_010 Hb_003507_020 Hb_003507_020 Hb_000329_610--Hb_003507_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.8987 2.87028 8.29065 6.36645 125.241 113.437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.4699 56.4709 33.5248 8.96759 5.44652

CAGE analysis