Hb_001504_190

Information

Type -
Description -
Location Contig1504: 192668-197836
Sequence    

Annotation

kegg
ID rcu:RCOM_0471170
description double-stranded RNA binding protein, putative
nr
ID XP_002527323.1
description double-stranded RNA binding protein, putative [Ricinus communis]
swissprot
ID A7LFZ6
description Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1
trembl
ID B9SMV4
description Double-stranded RNA binding protein, putative OS=Ricinus communis GN=RCOM_0471170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12659: 192727-197400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_190 0.0 - - double-stranded RNA binding protein, putative [Ricinus communis]
2 Hb_144824_010 0.112115583 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
3 Hb_002477_150 0.1268194608 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
4 Hb_000449_050 0.1307692209 - - Protein bem46, putative [Ricinus communis]
5 Hb_000003_340 0.1312786812 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
6 Hb_009028_030 0.131737544 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
7 Hb_001999_250 0.1323435806 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
8 Hb_001511_110 0.1331022558 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
9 Hb_000243_380 0.1340207696 - - PREDICTED: histone H1 [Jatropha curcas]
10 Hb_000340_110 0.1353803741 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
11 Hb_000265_250 0.1379941791 - - auxilin, putative [Ricinus communis]
12 Hb_011465_030 0.1385971723 - - PREDICTED: B2 protein [Jatropha curcas]
13 Hb_001247_230 0.1392208996 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002849_080 0.1430029836 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
15 Hb_003349_010 0.1432320554 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
16 Hb_001053_030 0.143509344 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_075449_020 0.1456479483 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
18 Hb_004136_040 0.14708596 - - putative protein kinase [Arabidopsis thaliana]
19 Hb_029223_050 0.1501307444 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
20 Hb_003206_030 0.1506633954 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_190 Hb_001504_190 Hb_144824_010 Hb_144824_010 Hb_001504_190--Hb_144824_010 Hb_002477_150 Hb_002477_150 Hb_001504_190--Hb_002477_150 Hb_000449_050 Hb_000449_050 Hb_001504_190--Hb_000449_050 Hb_000003_340 Hb_000003_340 Hb_001504_190--Hb_000003_340 Hb_009028_030 Hb_009028_030 Hb_001504_190--Hb_009028_030 Hb_001999_250 Hb_001999_250 Hb_001504_190--Hb_001999_250 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_000340_110 Hb_000340_110 Hb_144824_010--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_029223_050 Hb_029223_050 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070 Hb_011465_030 Hb_011465_030 Hb_002477_150--Hb_011465_030 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_001189_130 Hb_001189_130 Hb_000449_050--Hb_001189_130 Hb_000449_050--Hb_000340_110 Hb_001638_040 Hb_001638_040 Hb_000449_050--Hb_001638_040 Hb_000449_050--Hb_002477_150 Hb_124677_060 Hb_124677_060 Hb_000449_050--Hb_124677_060 Hb_004032_180 Hb_004032_180 Hb_000449_050--Hb_004032_180 Hb_000120_420 Hb_000120_420 Hb_000003_340--Hb_000120_420 Hb_000181_360 Hb_000181_360 Hb_000003_340--Hb_000181_360 Hb_004136_040 Hb_004136_040 Hb_000003_340--Hb_004136_040 Hb_000003_340--Hb_000449_050 Hb_000003_340--Hb_001511_110 Hb_057451_010 Hb_057451_010 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_009028_030--Hb_011465_030 Hb_001247_230 Hb_001247_230 Hb_001999_250--Hb_001247_230 Hb_003349_010 Hb_003349_010 Hb_001999_250--Hb_003349_010 Hb_001999_250--Hb_000265_250 Hb_075449_020 Hb_075449_020 Hb_001999_250--Hb_075449_020 Hb_002849_080 Hb_002849_080 Hb_001999_250--Hb_002849_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.83386 13.5166 2.22547 0.850249 7.50887 4.93096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16741 1.94907 1.07577 4.10012 1.51921

CAGE analysis