Hb_001504_210

Information

Type -
Description -
Location Contig1504: 201976-205687
Sequence    

Annotation

kegg
ID rcu:RCOM_0471190
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012067543.1
description PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
swissprot
ID Q0V7T5
description Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1
trembl
ID A0A067L426
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27021 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor-like protein kinase at1g80640 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12660: 203528-203758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_210 0.0 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
2 Hb_001817_040 0.0927692342 - - myosin XI, putative [Ricinus communis]
3 Hb_000847_130 0.0982194897 - - PREDICTED: fimbrin-2 [Jatropha curcas]
4 Hb_004007_140 0.1386717761 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
5 Hb_001140_190 0.1396931 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
6 Hb_001491_020 0.1410766504 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_000071_060 0.1421656461 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000331_170 0.1450421092 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
9 Hb_001269_060 0.1508711638 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
10 Hb_001511_210 0.1532326113 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
11 Hb_000017_200 0.1542844443 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
12 Hb_001258_130 0.1554347913 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
13 Hb_000031_240 0.1559329494 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_002518_040 0.1560833345 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_005675_050 0.1569549575 - - alpha-glucosidase, putative [Ricinus communis]
16 Hb_003666_070 0.1577347744 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
17 Hb_002609_120 0.1591543498 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
18 Hb_007632_160 0.1592161597 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008053_030 0.1592867653 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
20 Hb_003207_120 0.1609355667 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001504_210 Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_001504_210--Hb_001817_040 Hb_000847_130 Hb_000847_130 Hb_001504_210--Hb_000847_130 Hb_004007_140 Hb_004007_140 Hb_001504_210--Hb_004007_140 Hb_001140_190 Hb_001140_190 Hb_001504_210--Hb_001140_190 Hb_001491_020 Hb_001491_020 Hb_001504_210--Hb_001491_020 Hb_000071_060 Hb_000071_060 Hb_001504_210--Hb_000071_060 Hb_001817_040--Hb_000847_130 Hb_001817_040--Hb_001140_190 Hb_000748_120 Hb_000748_120 Hb_001817_040--Hb_000748_120 Hb_001817_040--Hb_000071_060 Hb_001817_040--Hb_004007_140 Hb_001279_240 Hb_001279_240 Hb_000847_130--Hb_001279_240 Hb_051663_010 Hb_051663_010 Hb_000847_130--Hb_051663_010 Hb_000847_130--Hb_000748_120 Hb_000017_200 Hb_000017_200 Hb_000847_130--Hb_000017_200 Hb_000438_160 Hb_000438_160 Hb_004007_140--Hb_000438_160 Hb_004007_140--Hb_001140_190 Hb_004007_140--Hb_000847_130 Hb_004007_140--Hb_001491_020 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001544_050 Hb_001544_050 Hb_001491_020--Hb_001544_050 Hb_001491_020--Hb_000438_160 Hb_000465_410 Hb_000465_410 Hb_001491_020--Hb_000465_410 Hb_001491_020--Hb_000847_130 Hb_001491_020--Hb_001817_040 Hb_000243_230 Hb_000243_230 Hb_000071_060--Hb_000243_230 Hb_008686_040 Hb_008686_040 Hb_000071_060--Hb_008686_040 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000072_230 Hb_000072_230 Hb_000071_060--Hb_000072_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0501664 0.356687 5.24501 3.44433 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.453195 0.192403 2.27099

CAGE analysis