Hb_001504_220

Information

Type -
Description -
Location Contig1504: 221811-229220
Sequence    

Annotation

kegg
ID rcu:RCOM_0471430
description ATP-binding cassette transporter, putative (EC:3.6.3.28 3.6.3.31)
nr
ID AIU41654.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID A0A097P9Q9
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG40 PE=2 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12662: 225692-225972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_220 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_012553_020 0.107617783 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
3 Hb_014037_010 0.1204563999 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
4 Hb_011200_020 0.1261511971 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_003399_030 0.1388130442 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
6 Hb_000152_810 0.1421237018 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
7 Hb_011063_060 0.1492383506 - - PREDICTED: endochitinase-like [Jatropha curcas]
8 Hb_004855_050 0.1522135255 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
9 Hb_004881_060 0.1541229562 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
10 Hb_009545_010 0.1555177847 transcription factor TF Family: GNAT Acetyltransferase [Medicago truncatula]
11 Hb_000010_200 0.1581848446 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_008692_010 0.1582824516 - - putative polyol transported protein 2 [Hevea brasiliensis]
13 Hb_005237_040 0.1587188628 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
14 Hb_000098_310 0.1589753501 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
15 Hb_025526_010 0.1598065132 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
16 Hb_001649_040 0.1609275424 - - Polygalacturonase precursor, putative [Ricinus communis]
17 Hb_008768_010 0.1617262768 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
18 Hb_056101_010 0.16198462 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
19 Hb_000984_080 0.1625618275 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_006788_150 0.1631893678 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001504_220 Hb_001504_220 Hb_012553_020 Hb_012553_020 Hb_001504_220--Hb_012553_020 Hb_014037_010 Hb_014037_010 Hb_001504_220--Hb_014037_010 Hb_011200_020 Hb_011200_020 Hb_001504_220--Hb_011200_020 Hb_003399_030 Hb_003399_030 Hb_001504_220--Hb_003399_030 Hb_000152_810 Hb_000152_810 Hb_001504_220--Hb_000152_810 Hb_011063_060 Hb_011063_060 Hb_001504_220--Hb_011063_060 Hb_004855_050 Hb_004855_050 Hb_012553_020--Hb_004855_050 Hb_012553_020--Hb_011063_060 Hb_000077_330 Hb_000077_330 Hb_012553_020--Hb_000077_330 Hb_008768_010 Hb_008768_010 Hb_012553_020--Hb_008768_010 Hb_000984_080 Hb_000984_080 Hb_012553_020--Hb_000984_080 Hb_005237_040 Hb_005237_040 Hb_014037_010--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_014037_010--Hb_009785_010 Hb_004884_200 Hb_004884_200 Hb_014037_010--Hb_004884_200 Hb_000236_050 Hb_000236_050 Hb_014037_010--Hb_000236_050 Hb_002391_350 Hb_002391_350 Hb_014037_010--Hb_002391_350 Hb_005211_090 Hb_005211_090 Hb_014037_010--Hb_005211_090 Hb_000098_310 Hb_000098_310 Hb_011200_020--Hb_000098_310 Hb_032225_040 Hb_032225_040 Hb_011200_020--Hb_032225_040 Hb_031042_030 Hb_031042_030 Hb_011200_020--Hb_031042_030 Hb_032631_050 Hb_032631_050 Hb_011200_020--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_011200_020--Hb_000421_270 Hb_001838_050 Hb_001838_050 Hb_003399_030--Hb_001838_050 Hb_003399_030--Hb_000984_080 Hb_088916_010 Hb_088916_010 Hb_003399_030--Hb_088916_010 Hb_001135_290 Hb_001135_290 Hb_003399_030--Hb_001135_290 Hb_002960_170 Hb_002960_170 Hb_003399_030--Hb_002960_170 Hb_001678_030 Hb_001678_030 Hb_003399_030--Hb_001678_030 Hb_009545_010 Hb_009545_010 Hb_000152_810--Hb_009545_010 Hb_055305_010 Hb_055305_010 Hb_000152_810--Hb_055305_010 Hb_000152_810--Hb_004855_050 Hb_142332_010 Hb_142332_010 Hb_000152_810--Hb_142332_010 Hb_000152_810--Hb_032631_050 Hb_001660_040 Hb_001660_040 Hb_011063_060--Hb_001660_040 Hb_008225_080 Hb_008225_080 Hb_011063_060--Hb_008225_080 Hb_010334_040 Hb_010334_040 Hb_011063_060--Hb_010334_040 Hb_000288_140 Hb_000288_140 Hb_011063_060--Hb_000288_140 Hb_000025_740 Hb_000025_740 Hb_011063_060--Hb_000025_740 Hb_005010_040 Hb_005010_040 Hb_011063_060--Hb_005010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00806396 2.98011 0.79866 1.42949 0.0115788 0.0105524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219105 0.452637 0.317965 10.3601 1.35765

CAGE analysis