Hb_001504_290

Information

Type -
Description -
Location Contig1504: 317680-320446
Sequence    

Annotation

kegg
ID tcc:TCM_035772
description DNA/RNA polymerases superfamily protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQP6
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_035774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_290 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_003724_030 0.0014688189 - - -
3 Hb_000526_130 0.0034043671 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
4 Hb_000107_460 0.0068549482 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
5 Hb_009230_030 0.0107195886 - - -
6 Hb_000866_480 0.0193883297 - - -
7 Hb_008159_030 0.0194715938 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
8 Hb_022693_100 0.0202643189 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_006810_080 0.0252179331 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
10 Hb_176138_010 0.0254571416 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
11 Hb_072368_010 0.0291316371 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
12 Hb_004693_030 0.03176942 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
13 Hb_005228_090 0.0344707227 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
14 Hb_006364_010 0.0351152882 - - -
15 Hb_006124_010 0.037703963 - - -
16 Hb_000163_310 0.0443721121 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
17 Hb_161981_020 0.0444127064 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_021931_030 0.0495712094 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_007441_030 0.0495921464 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
20 Hb_000703_310 0.0524057772 - - -

Gene co-expression network

sample Hb_001504_290 Hb_001504_290 Hb_003724_030 Hb_003724_030 Hb_001504_290--Hb_003724_030 Hb_000526_130 Hb_000526_130 Hb_001504_290--Hb_000526_130 Hb_000107_460 Hb_000107_460 Hb_001504_290--Hb_000107_460 Hb_009230_030 Hb_009230_030 Hb_001504_290--Hb_009230_030 Hb_000866_480 Hb_000866_480 Hb_001504_290--Hb_000866_480 Hb_008159_030 Hb_008159_030 Hb_001504_290--Hb_008159_030 Hb_003724_030--Hb_000526_130 Hb_003724_030--Hb_000107_460 Hb_003724_030--Hb_009230_030 Hb_003724_030--Hb_000866_480 Hb_022693_100 Hb_022693_100 Hb_003724_030--Hb_022693_100 Hb_000526_130--Hb_009230_030 Hb_000526_130--Hb_000107_460 Hb_000526_130--Hb_000866_480 Hb_000526_130--Hb_022693_100 Hb_000107_460--Hb_008159_030 Hb_000107_460--Hb_009230_030 Hb_072368_010 Hb_072368_010 Hb_000107_460--Hb_072368_010 Hb_009230_030--Hb_000866_480 Hb_009230_030--Hb_022693_100 Hb_006810_080 Hb_006810_080 Hb_009230_030--Hb_006810_080 Hb_000866_480--Hb_022693_100 Hb_000866_480--Hb_006810_080 Hb_176138_010 Hb_176138_010 Hb_000866_480--Hb_176138_010 Hb_008159_030--Hb_072368_010 Hb_004693_030 Hb_004693_030 Hb_008159_030--Hb_004693_030 Hb_005228_090 Hb_005228_090 Hb_008159_030--Hb_005228_090 Hb_006364_010 Hb_006364_010 Hb_008159_030--Hb_006364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00869885 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0225028 0

CAGE analysis