Hb_001504_330

Information

Type -
Description -
Location Contig1504: 337519-338736
Sequence    

Annotation

kegg
ID rcu:RCOM_1251820
description hypothetical protein
nr
ID XP_012073079.1
description PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID A0A067KPQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12666: 337280-339648 , PASA_asmbl_12667: 337341-339688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_330 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
2 Hb_000603_080 0.0724417913 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
3 Hb_002799_040 0.0796025087 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
4 Hb_000007_140 0.0820456436 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
5 Hb_031910_020 0.0880205581 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
6 Hb_000367_260 0.0880626974 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
7 Hb_003360_040 0.0936626652 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
8 Hb_005545_100 0.0953188468 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
9 Hb_001314_070 0.0977778031 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002119_130 0.0981773205 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
11 Hb_009803_050 0.1007559467 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
12 Hb_000928_110 0.1015060438 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
13 Hb_000393_020 0.1017389068 - - lipid binding protein, putative [Ricinus communis]
14 Hb_005488_200 0.1021902044 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
15 Hb_000454_090 0.1024825056 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
16 Hb_020805_130 0.1028434959 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000465_300 0.1032235632 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
18 Hb_004078_040 0.1050486795 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
19 Hb_001507_040 0.1054249619 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003994_260 0.1060201743 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_330 Hb_001504_330 Hb_000603_080 Hb_000603_080 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_031910_020 Hb_031910_020 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_000393_020 Hb_000393_020 Hb_002799_040--Hb_000393_020 Hb_002799_040--Hb_031910_020 Hb_002119_130 Hb_002119_130 Hb_002799_040--Hb_002119_130 Hb_001507_040 Hb_001507_040 Hb_002799_040--Hb_001507_040 Hb_002799_040--Hb_000603_080 Hb_000392_310 Hb_000392_310 Hb_000007_140--Hb_000392_310 Hb_013399_050 Hb_013399_050 Hb_000007_140--Hb_013399_050 Hb_000007_140--Hb_000603_080 Hb_000007_140--Hb_009803_050 Hb_005356_040 Hb_005356_040 Hb_000007_140--Hb_005356_040 Hb_004993_060 Hb_004993_060 Hb_031910_020--Hb_004993_060 Hb_031910_020--Hb_000603_080 Hb_031910_020--Hb_001314_070 Hb_000549_040 Hb_000549_040 Hb_031910_020--Hb_000549_040 Hb_000367_260--Hb_000603_080 Hb_000367_260--Hb_031910_020 Hb_030565_030 Hb_030565_030 Hb_000367_260--Hb_030565_030 Hb_006824_050 Hb_006824_050 Hb_000367_260--Hb_006824_050 Hb_005188_020 Hb_005188_020 Hb_000367_260--Hb_005188_020 Hb_003360_040--Hb_002119_130 Hb_007218_120 Hb_007218_120 Hb_003360_040--Hb_007218_120 Hb_000454_090 Hb_000454_090 Hb_003360_040--Hb_000454_090 Hb_000920_200 Hb_000920_200 Hb_003360_040--Hb_000920_200 Hb_001019_100 Hb_001019_100 Hb_003360_040--Hb_001019_100 Hb_000140_090 Hb_000140_090 Hb_003360_040--Hb_000140_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.90227 12.6964 9.74176 14.356 3.73459 6.10202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9855 18.4031 27.315 12.5429 11.2989

CAGE analysis