Hb_001505_020

Information

Type -
Description -
Location Contig1505: 46052-51595
Sequence    

Annotation

kegg
ID rcu:RCOM_0623190
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_012071506.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
swissprot
ID Q9WTV5
description 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus GN=Psmd9 PE=1 SV=1
trembl
ID A0A067KUP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04031 PE=4 SV=1
Gene Ontology
ID GO:0044238
description 26s proteasome non-atpase regulatory subunit 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12673: 46094-51555 , PASA_asmbl_12674: 50755-51011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001505_020 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
2 Hb_006816_530 0.0614329588 - - 60S ribosomal protein L18, putative [Ricinus communis]
3 Hb_002713_070 0.0644022443 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
4 Hb_000136_170 0.0650350159 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
5 Hb_001433_050 0.068391427 - - 60S ribosomal protein L18, putative [Ricinus communis]
6 Hb_000227_230 0.0695137741 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
7 Hb_001814_050 0.0720679091 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001998_050 0.0724315871 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
9 Hb_004375_100 0.0727084925 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
10 Hb_011628_040 0.0752561651 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
11 Hb_000134_070 0.0752769658 - - 60S ribosomal protein L6, putative [Ricinus communis]
12 Hb_004032_100 0.0755248236 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
13 Hb_003226_210 0.0760125798 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
14 Hb_002925_030 0.0762583674 - - 40S ribosomal protein S16B [Hevea brasiliensis]
15 Hb_002660_030 0.0775650705 - - conserved hypothetical protein [Ricinus communis]
16 Hb_015175_030 0.0780337705 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
17 Hb_000086_550 0.0782153923 - - Os02g0814700 [Oryza sativa Japonica Group]
18 Hb_000024_030 0.0790501563 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
19 Hb_000283_110 0.0791132309 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
20 Hb_003203_040 0.0791297448 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]

Gene co-expression network

sample Hb_001505_020 Hb_001505_020 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_002713_070 Hb_002713_070 Hb_001505_020--Hb_002713_070 Hb_000136_170 Hb_000136_170 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_002713_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_000227_230--Hb_002925_030 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81022 3.44197 5.21926 8.49951 9.23306 15.6821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8983 32.2508 15.7089 9.83738 4.80703

CAGE analysis