Hb_001506_010

Information

Type -
Description -
Location Contig1506: 6463-10394
Sequence    

Annotation

kegg
ID rcu:RCOM_0401100
description hypothetical protein
nr
ID XP_012084519.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A067JU50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20228 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001506_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
2 Hb_000101_160 0.1820740125 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
3 Hb_010317_020 0.2052234849 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
4 Hb_001678_020 0.2241648774 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
5 Hb_000038_030 0.237824535 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
6 Hb_024404_010 0.2443360273 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
7 Hb_024505_050 0.2516556299 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
8 Hb_004103_030 0.2534161709 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002233_090 0.255369446 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
10 Hb_000331_150 0.2565796735 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_006816_170 0.2667493304 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
12 Hb_002644_030 0.267027416 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
13 Hb_000431_020 0.2700758399 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
14 Hb_097968_010 0.282425001 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
15 Hb_000284_100 0.2840184058 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
16 Hb_006029_020 0.2842662781 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
17 Hb_007333_030 0.2893398611 - - -
18 Hb_000384_040 0.2923780585 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
19 Hb_002733_030 0.295824232 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
20 Hb_006960_020 0.2963197382 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]

Gene co-expression network

sample Hb_001506_010 Hb_001506_010 Hb_000101_160 Hb_000101_160 Hb_001506_010--Hb_000101_160 Hb_010317_020 Hb_010317_020 Hb_001506_010--Hb_010317_020 Hb_001678_020 Hb_001678_020 Hb_001506_010--Hb_001678_020 Hb_000038_030 Hb_000038_030 Hb_001506_010--Hb_000038_030 Hb_024404_010 Hb_024404_010 Hb_001506_010--Hb_024404_010 Hb_024505_050 Hb_024505_050 Hb_001506_010--Hb_024505_050 Hb_000101_160--Hb_001678_020 Hb_000857_050 Hb_000857_050 Hb_000101_160--Hb_000857_050 Hb_007603_010 Hb_007603_010 Hb_000101_160--Hb_007603_010 Hb_138600_010 Hb_138600_010 Hb_000101_160--Hb_138600_010 Hb_002233_090 Hb_002233_090 Hb_000101_160--Hb_002233_090 Hb_159555_010 Hb_159555_010 Hb_010317_020--Hb_159555_010 Hb_010317_020--Hb_000101_160 Hb_010317_020--Hb_001678_020 Hb_005656_060 Hb_005656_060 Hb_010317_020--Hb_005656_060 Hb_003881_050 Hb_003881_050 Hb_010317_020--Hb_003881_050 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_023323_010 Hb_023323_010 Hb_001678_020--Hb_023323_010 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040 Hb_000038_030--Hb_002233_090 Hb_011218_060 Hb_011218_060 Hb_000038_030--Hb_011218_060 Hb_000291_280 Hb_000291_280 Hb_000038_030--Hb_000291_280 Hb_001102_110 Hb_001102_110 Hb_000038_030--Hb_001102_110 Hb_000331_150 Hb_000331_150 Hb_000038_030--Hb_000331_150 Hb_000431_020 Hb_000431_020 Hb_000038_030--Hb_000431_020 Hb_104812_010 Hb_104812_010 Hb_024404_010--Hb_104812_010 Hb_007333_030 Hb_007333_030 Hb_024404_010--Hb_007333_030 Hb_135611_010 Hb_135611_010 Hb_024404_010--Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_024404_010--Hb_148909_010 Hb_002255_070 Hb_002255_070 Hb_024404_010--Hb_002255_070 Hb_000187_090 Hb_000187_090 Hb_024404_010--Hb_000187_090 Hb_001329_240 Hb_001329_240 Hb_024505_050--Hb_001329_240 Hb_006816_170 Hb_006816_170 Hb_024505_050--Hb_006816_170 Hb_002489_010 Hb_002489_010 Hb_024505_050--Hb_002489_010 Hb_034299_040 Hb_034299_040 Hb_024505_050--Hb_034299_040 Hb_002131_040 Hb_002131_040 Hb_024505_050--Hb_002131_040 Hb_004342_030 Hb_004342_030 Hb_024505_050--Hb_004342_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.344719 0.0624271 0.178064 0.0533538 1.57678 0.732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.05741 0.805267 0.14379

CAGE analysis