Hb_001506_030

Information

Type -
Description -
Location Contig1506: 38095-51728
Sequence    

Annotation

kegg
ID rcu:RCOM_0497320
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID XP_002527854.1
description DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
swissprot
ID Q7Y1I7
description DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1
trembl
ID B9SPD5
description Cytosine-specific methyltransferase OS=Ricinus communis GN=RCOM_0497320 PE=3 SV=1
Gene Ontology
ID GO:0016740
description dna (cytosine-5)-methyltransferase 1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001506_030 0.0 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
2 Hb_044653_010 0.1275041631 - - PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
3 Hb_163400_010 0.2615714779 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
4 Hb_186304_010 0.2695418389 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
5 Hb_076233_020 0.2830809716 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
6 Hb_000122_060 0.2863285338 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
7 Hb_014361_050 0.2927002877 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
8 Hb_125948_010 0.2981367265 - - heat-shock protein, putative [Ricinus communis]
9 Hb_008221_130 0.3057857053 - - hypothetical protein VITISV_016971 [Vitis vinifera]
10 Hb_000997_010 0.3075718516 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
11 Hb_007879_010 0.3090949811 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
12 Hb_082945_020 0.3122851253 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
13 Hb_000836_100 0.3163142696 - - conserved hypothetical protein [Ricinus communis]
14 Hb_070541_030 0.3202024988 - - -
15 Hb_002426_010 0.3212410048 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_000197_110 0.3290270258 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011164_010 0.3297421918 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
18 Hb_000510_220 0.3362338917 - - -
19 Hb_057247_010 0.336387979 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
20 Hb_111876_010 0.3376851311 - - Auxin response factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001506_030 Hb_001506_030 Hb_044653_010 Hb_044653_010 Hb_001506_030--Hb_044653_010 Hb_163400_010 Hb_163400_010 Hb_001506_030--Hb_163400_010 Hb_186304_010 Hb_186304_010 Hb_001506_030--Hb_186304_010 Hb_076233_020 Hb_076233_020 Hb_001506_030--Hb_076233_020 Hb_000122_060 Hb_000122_060 Hb_001506_030--Hb_000122_060 Hb_014361_050 Hb_014361_050 Hb_001506_030--Hb_014361_050 Hb_125948_010 Hb_125948_010 Hb_044653_010--Hb_125948_010 Hb_044653_010--Hb_000122_060 Hb_044653_010--Hb_163400_010 Hb_070541_030 Hb_070541_030 Hb_044653_010--Hb_070541_030 Hb_044653_010--Hb_014361_050 Hb_053073_010 Hb_053073_010 Hb_163400_010--Hb_053073_010 Hb_163400_010--Hb_186304_010 Hb_002984_020 Hb_002984_020 Hb_163400_010--Hb_002984_020 Hb_068307_010 Hb_068307_010 Hb_163400_010--Hb_068307_010 Hb_186304_010--Hb_070541_030 Hb_102437_010 Hb_102437_010 Hb_186304_010--Hb_102437_010 Hb_182249_010 Hb_182249_010 Hb_186304_010--Hb_182249_010 Hb_134488_010 Hb_134488_010 Hb_186304_010--Hb_134488_010 Hb_071781_010 Hb_071781_010 Hb_186304_010--Hb_071781_010 Hb_000997_010 Hb_000997_010 Hb_076233_020--Hb_000997_010 Hb_076233_020--Hb_014361_050 Hb_055339_010 Hb_055339_010 Hb_076233_020--Hb_055339_010 Hb_004570_050 Hb_004570_050 Hb_076233_020--Hb_004570_050 Hb_057247_010 Hb_057247_010 Hb_076233_020--Hb_057247_010 Hb_169329_010 Hb_169329_010 Hb_076233_020--Hb_169329_010 Hb_000122_060--Hb_125948_010 Hb_002039_050 Hb_002039_050 Hb_000122_060--Hb_002039_050 Hb_111876_010 Hb_111876_010 Hb_000122_060--Hb_111876_010 Hb_003438_060 Hb_003438_060 Hb_000122_060--Hb_003438_060 Hb_014361_050--Hb_000997_010 Hb_015928_020 Hb_015928_020 Hb_014361_050--Hb_015928_020 Hb_061466_020 Hb_061466_020 Hb_014361_050--Hb_061466_020 Hb_006286_010 Hb_006286_010 Hb_014361_050--Hb_006286_010 Hb_014361_050--Hb_055339_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0109935 0.0104246 0.0105243 0.0133089 0.0132476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis