Hb_001507_010

Information

Type -
Description -
Location Contig1507: 6481-8951
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10460g
description POPTRDRAFT_737826; hypothetical protein
nr
ID XP_012065287.1
description PREDICTED: xylose isomerase [Jatropha curcas]
swissprot
ID Q9FKK7
description Xylose isomerase OS=Arabidopsis thaliana GN=XYLA PE=2 SV=2
trembl
ID A0A067L5S0
description Xylose isomerase OS=Jatropha curcas GN=JCGZ_23014 PE=3 SV=1
Gene Ontology
ID GO:0009045
description xylose isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_010 0.0 - - PREDICTED: xylose isomerase [Jatropha curcas]
2 Hb_013483_010 0.1774617661 - - -
3 Hb_000103_050 0.2060704012 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]
4 Hb_010710_050 0.2183304884 - - -
5 Hb_178968_170 0.2261957874 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
6 Hb_000190_110 0.2343326167 - - -
7 Hb_099069_010 0.239849971 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
8 Hb_143766_100 0.2555745155 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
9 Hb_002450_070 0.2768629941 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
10 Hb_004324_150 0.2790222382 - - -
11 Hb_000078_010 0.2803831951 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
12 Hb_000684_160 0.2811921022 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
13 Hb_001425_060 0.2830535645 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001258_140 0.2835773196 - - -
15 Hb_008841_010 0.2885468552 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
16 Hb_012395_200 0.2901716083 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001425_050 0.2905447558 - - -
18 Hb_001723_080 0.2916350196 - - hypothetical protein L484_026139 [Morus notabilis]
19 Hb_001579_310 0.2935484899 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
20 Hb_000313_010 0.2936332903 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_001507_010 Hb_001507_010 Hb_013483_010 Hb_013483_010 Hb_001507_010--Hb_013483_010 Hb_000103_050 Hb_000103_050 Hb_001507_010--Hb_000103_050 Hb_010710_050 Hb_010710_050 Hb_001507_010--Hb_010710_050 Hb_178968_170 Hb_178968_170 Hb_001507_010--Hb_178968_170 Hb_000190_110 Hb_000190_110 Hb_001507_010--Hb_000190_110 Hb_099069_010 Hb_099069_010 Hb_001507_010--Hb_099069_010 Hb_013483_010--Hb_000103_050 Hb_013483_010--Hb_010710_050 Hb_001012_020 Hb_001012_020 Hb_013483_010--Hb_001012_020 Hb_145226_010 Hb_145226_010 Hb_013483_010--Hb_145226_010 Hb_013483_010--Hb_099069_010 Hb_000103_050--Hb_010710_050 Hb_008516_020 Hb_008516_020 Hb_000103_050--Hb_008516_020 Hb_148422_010 Hb_148422_010 Hb_000103_050--Hb_148422_010 Hb_084391_010 Hb_084391_010 Hb_000103_050--Hb_084391_010 Hb_115053_010 Hb_115053_010 Hb_010710_050--Hb_115053_010 Hb_000313_010 Hb_000313_010 Hb_010710_050--Hb_000313_010 Hb_001579_310 Hb_001579_310 Hb_010710_050--Hb_001579_310 Hb_008841_010 Hb_008841_010 Hb_010710_050--Hb_008841_010 Hb_080477_060 Hb_080477_060 Hb_178968_170--Hb_080477_060 Hb_004474_010 Hb_004474_010 Hb_178968_170--Hb_004474_010 Hb_001723_080 Hb_001723_080 Hb_178968_170--Hb_001723_080 Hb_143766_100 Hb_143766_100 Hb_178968_170--Hb_143766_100 Hb_012395_210 Hb_012395_210 Hb_178968_170--Hb_012395_210 Hb_103752_010 Hb_103752_010 Hb_178968_170--Hb_103752_010 Hb_000603_210 Hb_000603_210 Hb_000190_110--Hb_000603_210 Hb_000078_010 Hb_000078_010 Hb_000190_110--Hb_000078_010 Hb_000190_110--Hb_001723_080 Hb_000190_110--Hb_178968_170 Hb_000300_400 Hb_000300_400 Hb_000190_110--Hb_000300_400 Hb_000444_030 Hb_000444_030 Hb_000190_110--Hb_000444_030 Hb_111648_010 Hb_111648_010 Hb_099069_010--Hb_111648_010 Hb_099069_010--Hb_145226_010 Hb_000157_040 Hb_000157_040 Hb_099069_010--Hb_000157_040 Hb_099069_010--Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_099069_010--Hb_007810_030 Hb_000270_410 Hb_000270_410 Hb_099069_010--Hb_000270_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0187629 0 0.131895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215308 0.211664 0.232991 0 0

CAGE analysis