Hb_001507_020

Information

Type -
Description -
Location Contig1507: 9553-10767
Sequence    

Annotation

kegg
ID rcu:RCOM_0785070
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012076004.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
swissprot
ID Q5XEY7
description Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2
trembl
ID B9SB57
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0785070 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g14170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
2 Hb_001975_160 0.0574802102 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002678_020 0.0613484472 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
4 Hb_004684_010 0.0729461448 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
5 Hb_001584_150 0.07480942 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
6 Hb_003464_060 0.0752548566 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
7 Hb_007757_110 0.0755443868 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
8 Hb_008500_010 0.0772169853 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
9 Hb_002311_040 0.0774063199 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
10 Hb_000577_010 0.0784981348 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
11 Hb_002496_030 0.0789624021 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
12 Hb_000204_210 0.0797733667 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
13 Hb_000453_170 0.0808314473 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_175338_030 0.0838806607 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
15 Hb_013405_030 0.0845708415 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006316_040 0.0848760738 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
17 Hb_003057_110 0.0850050844 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
18 Hb_002783_260 0.0858938846 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
19 Hb_000317_020 0.086299549 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
20 Hb_000022_250 0.0867502572 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]

Gene co-expression network

sample Hb_001507_020 Hb_001507_020 Hb_001975_160 Hb_001975_160 Hb_001507_020--Hb_001975_160 Hb_002678_020 Hb_002678_020 Hb_001507_020--Hb_002678_020 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_001584_150 Hb_001584_150 Hb_001507_020--Hb_001584_150 Hb_003464_060 Hb_003464_060 Hb_001507_020--Hb_003464_060 Hb_007757_110 Hb_007757_110 Hb_001507_020--Hb_007757_110 Hb_000317_020 Hb_000317_020 Hb_001975_160--Hb_000317_020 Hb_013405_030 Hb_013405_030 Hb_001975_160--Hb_013405_030 Hb_000776_110 Hb_000776_110 Hb_001975_160--Hb_000776_110 Hb_001975_160--Hb_007757_110 Hb_000152_820 Hb_000152_820 Hb_001975_160--Hb_000152_820 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_000427_050 Hb_000427_050 Hb_002678_020--Hb_000427_050 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040 Hb_007416_180 Hb_007416_180 Hb_004684_010--Hb_007416_180 Hb_004684_010--Hb_002311_040 Hb_004684_010--Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_004684_010--Hb_000768_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_008500_010 Hb_008500_010 Hb_001584_150--Hb_008500_010 Hb_001584_150--Hb_007757_110 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001584_150--Hb_002311_040 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83734 3.56023 1.35178 1.63528 4.03201 5.07676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19781 3.83609 6.78949 2.26674 2.73498

CAGE analysis