Hb_001507_030

Information

Type -
Description -
Location Contig1507: 25085-25900
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23290g
description POPTRDRAFT_640727; ribose 5-phosphate isomerase family protein
nr
ID XP_012076005.1
description PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
swissprot
ID Q9ZU38
description Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana GN=RPI2 PE=1 SV=1
trembl
ID A0A067KEK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11107 PE=3 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_030 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
2 Hb_001511_190 0.153667629 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
3 Hb_005663_070 0.156420302 - - dehydrin protein [Manihot esculenta]
4 Hb_001944_020 0.1590277624 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
5 Hb_003020_180 0.1687492451 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
6 Hb_002450_030 0.1738804451 - - ATPP2-A13, putative [Ricinus communis]
7 Hb_002759_260 0.1851209231 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
8 Hb_000891_030 0.1910708632 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
9 Hb_012107_010 0.1916752477 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
10 Hb_001500_030 0.1958933821 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
11 Hb_000627_090 0.2034026748 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005363_010 0.2040966055 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
13 Hb_002217_090 0.206044667 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
14 Hb_002701_220 0.2105109067 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
15 Hb_004837_150 0.2107512211 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
16 Hb_172632_050 0.2119990342 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
17 Hb_000042_330 0.2123444251 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003687_030 0.2137919221 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_006909_060 0.2148872667 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
20 Hb_000645_200 0.2165340585 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]

Gene co-expression network

sample Hb_001507_030 Hb_001507_030 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_003020_180 Hb_003020_180 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_000008_110 Hb_000008_110 Hb_001511_190--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_001511_190--Hb_000345_500 Hb_001511_190--Hb_002759_260 Hb_012107_010 Hb_012107_010 Hb_001511_190--Hb_012107_010 Hb_002875_070 Hb_002875_070 Hb_001511_190--Hb_002875_070 Hb_171900_020 Hb_171900_020 Hb_005663_070--Hb_171900_020 Hb_006909_060 Hb_006909_060 Hb_005663_070--Hb_006909_060 Hb_004724_210 Hb_004724_210 Hb_005663_070--Hb_004724_210 Hb_005663_070--Hb_001944_020 Hb_001235_170 Hb_001235_170 Hb_005663_070--Hb_001235_170 Hb_005663_070--Hb_012107_010 Hb_002701_220 Hb_002701_220 Hb_001944_020--Hb_002701_220 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_001944_020--Hb_012107_010 Hb_002053_130 Hb_002053_130 Hb_001944_020--Hb_002053_130 Hb_003747_210 Hb_003747_210 Hb_001944_020--Hb_003747_210 Hb_001500_030 Hb_001500_030 Hb_001944_020--Hb_001500_030 Hb_002639_100 Hb_002639_100 Hb_003020_180--Hb_002639_100 Hb_006935_010 Hb_006935_010 Hb_003020_180--Hb_006935_010 Hb_005779_030 Hb_005779_030 Hb_003020_180--Hb_005779_030 Hb_000627_090 Hb_000627_090 Hb_003020_180--Hb_000627_090 Hb_003687_030 Hb_003687_030 Hb_003020_180--Hb_003687_030 Hb_003849_190 Hb_003849_190 Hb_002450_030--Hb_003849_190 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_023344_110 Hb_023344_110 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_000645_200 Hb_000645_200 Hb_002450_030--Hb_000645_200 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_002759_260--Hb_002875_070 Hb_002759_260--Hb_023344_110 Hb_002759_260--Hb_003849_190 Hb_002759_260--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_002759_260--Hb_000042_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8908 142.264 27.2714 131.612 5.08446 8.3299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.9426 69.4249 32.9741 14.6576 31.3994

CAGE analysis