Hb_001507_040

Information

Type -
Description -
Location Contig1507: 28319-42592
Sequence    

Annotation

kegg
ID rcu:RCOM_0785080
description hypothetical protein
nr
ID XP_002523227.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55GJ3
description Nuclear control of ATPase protein 2 OS=Dictyostelium discoideum GN=nca2 PE=3 SV=1
trembl
ID B9SB58
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0785080 PE=4 SV=1
Gene Ontology
ID GO:0005741
description dgd1 suppressor 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12701: 28408-42620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020805_130 0.059251378 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_008616_070 0.0655728523 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
4 Hb_002660_070 0.0732391032 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
5 Hb_000445_040 0.0769801862 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
6 Hb_000165_160 0.0776080349 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
7 Hb_006615_020 0.0800206498 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
8 Hb_001959_190 0.0806242103 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
9 Hb_005488_200 0.0817242288 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
10 Hb_000603_080 0.084405144 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
11 Hb_001357_300 0.0852165684 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000840_250 0.0859749114 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
13 Hb_001663_050 0.0878634542 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
14 Hb_015778_010 0.0879102031 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
15 Hb_001633_210 0.0895171503 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
16 Hb_006420_080 0.0898010256 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001314_070 0.0912084958 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000783_020 0.092112074 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
19 Hb_001811_030 0.0924089883 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_001014_030 0.092975468 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001507_040 Hb_001507_040 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_008616_070--Hb_002660_070 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010 Hb_000120_960 Hb_000120_960 Hb_002660_070--Hb_000120_960 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_002660_070--Hb_020805_130 Hb_012325_020 Hb_012325_020 Hb_000445_040--Hb_012325_020 Hb_000445_040--Hb_000165_160 Hb_000445_040--Hb_020805_130 Hb_001318_270 Hb_001318_270 Hb_000445_040--Hb_001318_270 Hb_002830_030 Hb_002830_030 Hb_000445_040--Hb_002830_030 Hb_002799_070 Hb_002799_070 Hb_000165_160--Hb_002799_070 Hb_005183_120 Hb_005183_120 Hb_000165_160--Hb_005183_120 Hb_000783_020 Hb_000783_020 Hb_000165_160--Hb_000783_020 Hb_000334_150 Hb_000334_150 Hb_000165_160--Hb_000334_150 Hb_001902_140 Hb_001902_140 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000015_040 Hb_000015_040 Hb_006615_020--Hb_000015_040 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.41673 4.99525 4.48241 5.8514 4.52344 4.96733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4913 9.08046 15.2904 8.38991 5.49394

CAGE analysis