Hb_001507_050

Information

Type -
Description -
Location Contig1507: 44798-51077
Sequence    

Annotation

kegg
ID rcu:RCOM_0785100
description cysteine desulfurylase, putative (EC:4.4.1.16)
nr
ID XP_012076008.1
description PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q93WX6
description Cysteine desulfurase 1, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1
trembl
ID A0A067KRV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11109 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cysteine desulfurase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12703: 44833-51002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_050 0.0 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000960_080 0.0402619327 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
3 Hb_003680_020 0.0542829405 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_048476_080 0.0579933075 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
5 Hb_000270_170 0.0620466843 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
6 Hb_008165_020 0.0631465424 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_160608_010 0.0664735627 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
8 Hb_000844_050 0.0676214337 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
9 Hb_000318_150 0.0689160854 - - RNA-binding protein Nova-1, putative [Ricinus communis]
10 Hb_000173_190 0.0718018479 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003661_010 0.0721998516 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
12 Hb_000172_360 0.0748104979 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
13 Hb_000035_100 0.0764580247 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_001141_240 0.0767101057 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
15 Hb_001414_010 0.0769171492 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
16 Hb_000015_200 0.0771074647 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
17 Hb_006100_020 0.078734198 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_000103_290 0.0788031866 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
19 Hb_000664_090 0.0788456961 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
20 Hb_000300_030 0.0795411525 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]

Gene co-expression network

sample Hb_001507_050 Hb_001507_050 Hb_000960_080 Hb_000960_080 Hb_001507_050--Hb_000960_080 Hb_003680_020 Hb_003680_020 Hb_001507_050--Hb_003680_020 Hb_048476_080 Hb_048476_080 Hb_001507_050--Hb_048476_080 Hb_000270_170 Hb_000270_170 Hb_001507_050--Hb_000270_170 Hb_008165_020 Hb_008165_020 Hb_001507_050--Hb_008165_020 Hb_160608_010 Hb_160608_010 Hb_001507_050--Hb_160608_010 Hb_000960_080--Hb_003680_020 Hb_000318_150 Hb_000318_150 Hb_000960_080--Hb_000318_150 Hb_000960_080--Hb_000270_170 Hb_000059_240 Hb_000059_240 Hb_000960_080--Hb_000059_240 Hb_033312_130 Hb_033312_130 Hb_000960_080--Hb_033312_130 Hb_000844_050 Hb_000844_050 Hb_003680_020--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_003680_020--Hb_003661_010 Hb_003680_020--Hb_048476_080 Hb_003680_020--Hb_000059_240 Hb_048476_080--Hb_000844_050 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_000270_170--Hb_006100_020 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_160608_010--Hb_001414_010 Hb_160608_010--Hb_000318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21462 11.2958 10.5988 10.4278 3.79942 3.38253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0115 4.32853 3.88706 10.6192 12.7188

CAGE analysis