Hb_001508_010

Information

Type -
Description -
Location Contig1508: 24837-30443
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12715: 25027-25491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001508_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_079902_010 0.0819262235 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
3 Hb_000373_140 0.0991399196 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_101462_010 0.1028319307 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
5 Hb_002553_030 0.1049019497 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
6 Hb_002551_030 0.1080927606 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
7 Hb_077242_020 0.1184300656 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
8 Hb_027638_010 0.1191831716 - - Protein KES1, putative [Ricinus communis]
9 Hb_000123_070 0.1244387112 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_000879_260 0.1276584352 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
11 Hb_161881_010 0.1312345685 - - laccase, putative [Ricinus communis]
12 Hb_004643_010 0.1328128874 - - cytochrome B, putative [Ricinus communis]
13 Hb_000208_220 0.1386449005 - - -
14 Hb_004208_040 0.1389893907 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
15 Hb_002010_010 0.1419457987 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
16 Hb_004375_020 0.1447947777 - - hypothetical protein VITISV_034560 [Vitis vinifera]
17 Hb_007044_030 0.1467624736 - - Os06g0273400 [Oryza sativa Japonica Group]
18 Hb_009193_050 0.1468343366 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
19 Hb_012528_040 0.148575923 - - -
20 Hb_002395_040 0.149551356 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_001508_010 Hb_001508_010 Hb_079902_010 Hb_079902_010 Hb_001508_010--Hb_079902_010 Hb_000373_140 Hb_000373_140 Hb_001508_010--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_002551_030 Hb_002551_030 Hb_001508_010--Hb_002551_030 Hb_077242_020 Hb_077242_020 Hb_001508_010--Hb_077242_020 Hb_079902_010--Hb_000373_140 Hb_079902_010--Hb_077242_020 Hb_079902_010--Hb_101462_010 Hb_002395_040 Hb_002395_040 Hb_079902_010--Hb_002395_040 Hb_004208_040 Hb_004208_040 Hb_079902_010--Hb_004208_040 Hb_000373_140--Hb_101462_010 Hb_000373_140--Hb_004208_040 Hb_004987_040 Hb_004987_040 Hb_000373_140--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070 Hb_101462_010--Hb_000123_070 Hb_101462_010--Hb_004208_040 Hb_101462_010--Hb_004987_040 Hb_101462_010--Hb_004375_020 Hb_000208_220 Hb_000208_220 Hb_002553_030--Hb_000208_220 Hb_002553_030--Hb_000373_140 Hb_003414_020 Hb_003414_020 Hb_002553_030--Hb_003414_020 Hb_184798_060 Hb_184798_060 Hb_002553_030--Hb_184798_060 Hb_001761_160 Hb_001761_160 Hb_002553_030--Hb_001761_160 Hb_062192_020 Hb_062192_020 Hb_002551_030--Hb_062192_020 Hb_027638_010 Hb_027638_010 Hb_002551_030--Hb_027638_010 Hb_171685_070 Hb_171685_070 Hb_002551_030--Hb_171685_070 Hb_034168_010 Hb_034168_010 Hb_002551_030--Hb_034168_010 Hb_002551_030--Hb_077242_020 Hb_041813_030 Hb_041813_030 Hb_077242_020--Hb_041813_030 Hb_006040_030 Hb_006040_030 Hb_077242_020--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_077242_020--Hb_042463_070 Hb_077242_020--Hb_101462_010 Hb_156746_010 Hb_156746_010 Hb_077242_020--Hb_156746_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118351 0.0411101 0.0185481 0.0178165 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00844348 0.801883

CAGE analysis