Hb_001508_020

Information

Type -
Description -
Location Contig1508: 75784-92677
Sequence    

Annotation

kegg
ID rcu:RCOM_1375640
description myosin vIII, putative
nr
ID XP_002523758.1
description myosin vIII, putative [Ricinus communis]
swissprot
ID Q9LHE9
description Myosin-1 OS=Arabidopsis thaliana GN=VIII-1 PE=1 SV=1
trembl
ID B9SCN9
description Myosin vIII, putative OS=Ricinus communis GN=RCOM_1375640 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12713: 13255-92793 , PASA_asmbl_12714: 80157-80792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001508_020 0.0 - - myosin vIII, putative [Ricinus communis]
2 Hb_003529_130 0.0945203773 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
3 Hb_010925_020 0.1111324821 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
4 Hb_001369_350 0.1113394411 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
5 Hb_000021_020 0.1113974556 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
6 Hb_003894_040 0.1145290754 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_018202_050 0.1162598733 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
8 Hb_002307_350 0.116472303 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_004657_090 0.1196099166 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
10 Hb_002092_100 0.1198824866 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
11 Hb_003029_130 0.1202101705 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
12 Hb_000139_230 0.120463755 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
13 Hb_048476_150 0.1215795757 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
14 Hb_002681_170 0.1247699096 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_006915_020 0.1261067844 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
16 Hb_002805_060 0.1278908877 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
17 Hb_005053_010 0.1307102932 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
18 Hb_007456_010 0.1312112783 - - hypothetical protein L484_003540 [Morus notabilis]
19 Hb_000363_380 0.1318805994 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
20 Hb_000599_170 0.1330855248 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_001508_020 Hb_001508_020 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_000021_020 Hb_000021_020 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050 Hb_003529_130--Hb_000021_020 Hb_000120_620 Hb_000120_620 Hb_003529_130--Hb_000120_620 Hb_003029_130 Hb_003029_130 Hb_003529_130--Hb_003029_130 Hb_080147_040 Hb_080147_040 Hb_003529_130--Hb_080147_040 Hb_011609_170 Hb_011609_170 Hb_003529_130--Hb_011609_170 Hb_010925_020--Hb_003029_130 Hb_001473_090 Hb_001473_090 Hb_010925_020--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_010925_020--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_010925_020--Hb_001178_150 Hb_010925_020--Hb_001369_350 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020 Hb_001369_350--Hb_001178_150 Hb_001369_350--Hb_000935_090 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_001369_350--Hb_000120_620 Hb_000025_650 Hb_000025_650 Hb_001369_350--Hb_000025_650 Hb_000021_020--Hb_011609_170 Hb_000021_020--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_000021_020--Hb_006915_020 Hb_005408_020 Hb_005408_020 Hb_000021_020--Hb_005408_020 Hb_008725_130 Hb_008725_130 Hb_000021_020--Hb_008725_130 Hb_002805_060 Hb_002805_060 Hb_003894_040--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_003894_040--Hb_000599_170 Hb_003894_040--Hb_018202_050 Hb_027380_030 Hb_027380_030 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_003894_040--Hb_006915_020 Hb_000347_270 Hb_000347_270 Hb_018202_050--Hb_000347_270 Hb_018202_050--Hb_001369_350 Hb_002092_100 Hb_002092_100 Hb_018202_050--Hb_002092_100 Hb_002902_020 Hb_002902_020 Hb_018202_050--Hb_002902_020 Hb_011918_050 Hb_011918_050 Hb_018202_050--Hb_011918_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.0944 31.2836 45.2682 31.3453 50.3921 75.2704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26535 5.76278 7.33863 26.2672 27.3104

CAGE analysis