Hb_001511_020

Information

Type -
Description -
Location Contig1511: 13895-22509
Sequence    

Annotation

kegg
ID rcu:RCOM_1550320
description hypothetical protein
nr
ID XP_012086381.1
description PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
swissprot
ID Q9LSX7
description Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1
trembl
ID A0A067JPH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22896 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12752: 14665-15037 , PASA_asmbl_12755: 20596-22481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_020 0.0 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
2 Hb_001439_150 0.0603284903 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
3 Hb_001301_160 0.0649849603 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
4 Hb_000162_090 0.0659109132 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
5 Hb_001623_420 0.0716661206 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_003642_060 0.0718778311 - - hypothetical protein RCOM_1189860 [Ricinus communis]
7 Hb_002685_140 0.0742868169 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_000089_220 0.0750757428 - - PREDICTED: protein FAM133-like [Populus euphratica]
9 Hb_001913_010 0.0776731023 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
10 Hb_001898_230 0.0780320332 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
11 Hb_168707_030 0.0792590894 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_005306_110 0.0797391469 - - casein kinase, putative [Ricinus communis]
13 Hb_011571_020 0.0822500356 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
14 Hb_003001_140 0.082623409 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
15 Hb_010381_070 0.0829376877 - - PREDICTED: protein STU1-like [Jatropha curcas]
16 Hb_000473_040 0.0850521489 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
17 Hb_135545_010 0.0851155305 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_001635_170 0.0852311928 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
19 Hb_004109_200 0.085896857 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
20 Hb_006185_050 0.0861806508 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]

Gene co-expression network

sample Hb_001511_020 Hb_001511_020 Hb_001439_150 Hb_001439_150 Hb_001511_020--Hb_001439_150 Hb_001301_160 Hb_001301_160 Hb_001511_020--Hb_001301_160 Hb_000162_090 Hb_000162_090 Hb_001511_020--Hb_000162_090 Hb_001623_420 Hb_001623_420 Hb_001511_020--Hb_001623_420 Hb_003642_060 Hb_003642_060 Hb_001511_020--Hb_003642_060 Hb_002685_140 Hb_002685_140 Hb_001511_020--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_001439_150--Hb_002685_140 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001301_160--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_000162_090--Hb_003642_060 Hb_000803_150 Hb_000803_150 Hb_000162_090--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000162_090--Hb_000165_030 Hb_000089_220 Hb_000089_220 Hb_000162_090--Hb_000089_220 Hb_001913_010 Hb_001913_010 Hb_000162_090--Hb_001913_010 Hb_001584_330 Hb_001584_330 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_005306_110 Hb_005306_110 Hb_001623_420--Hb_005306_110 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_001214_130 Hb_001214_130 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_003642_060--Hb_168707_030 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_002685_140--Hb_000327_120 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.2115 22.3538 21.0394 12.0889 34.8148 45.3254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1782 36.2215 35.7815 9.7913 8.01272

CAGE analysis