Hb_001511_030

Information

Type -
Description -
Location Contig1511: 79560-88586
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19270g
description POPTRDRAFT_886511; hypothetical protein
nr
ID XP_012086926.1
description PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
swissprot
ID C0LGQ4
description Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1
trembl
ID A0A067L8H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01221 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor-like protein kinase at3g56050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12756: 79708-79946 , PASA_asmbl_12757: 81457-82081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_030 0.0 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
2 Hb_000818_120 0.1015596851 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007426_220 0.1107615985 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
4 Hb_002249_170 0.122572717 - - copine, putative [Ricinus communis]
5 Hb_012545_030 0.1260426836 - - Polyadenylate-binding protein RBP47C [Glycine soja]
6 Hb_004659_010 0.1269217004 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
7 Hb_001155_050 0.1297435385 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
8 Hb_003106_200 0.1362591556 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
9 Hb_023091_010 0.1384032142 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
10 Hb_000086_430 0.1410466591 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
11 Hb_000086_270 0.141736263 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_015778_040 0.1437899838 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
13 Hb_015807_080 0.1440381178 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
14 Hb_015026_020 0.1446366202 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
15 Hb_000235_070 0.1455568434 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
16 Hb_008120_040 0.146014667 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_104920_010 0.1467742362 - - hypothetical protein VITISV_031859 [Vitis vinifera]
18 Hb_000979_140 0.1472979056 - - kinase family protein [Populus trichocarpa]
19 Hb_001318_150 0.148095866 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
20 Hb_001198_080 0.1487513232 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_030 Hb_001511_030 Hb_000818_120 Hb_000818_120 Hb_001511_030--Hb_000818_120 Hb_007426_220 Hb_007426_220 Hb_001511_030--Hb_007426_220 Hb_002249_170 Hb_002249_170 Hb_001511_030--Hb_002249_170 Hb_012545_030 Hb_012545_030 Hb_001511_030--Hb_012545_030 Hb_004659_010 Hb_004659_010 Hb_001511_030--Hb_004659_010 Hb_001155_050 Hb_001155_050 Hb_001511_030--Hb_001155_050 Hb_001198_080 Hb_001198_080 Hb_000818_120--Hb_001198_080 Hb_003106_200 Hb_003106_200 Hb_000818_120--Hb_003106_200 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_000818_120--Hb_001155_050 Hb_000818_120--Hb_002249_170 Hb_005903_020 Hb_005903_020 Hb_007426_220--Hb_005903_020 Hb_011671_340 Hb_011671_340 Hb_007426_220--Hb_011671_340 Hb_000620_020 Hb_000620_020 Hb_007426_220--Hb_000620_020 Hb_007426_220--Hb_001155_050 Hb_002871_040 Hb_002871_040 Hb_007426_220--Hb_002871_040 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_000421_230 Hb_000421_230 Hb_012545_030--Hb_000421_230 Hb_005701_110 Hb_005701_110 Hb_012545_030--Hb_005701_110 Hb_006120_150 Hb_006120_150 Hb_012545_030--Hb_006120_150 Hb_012545_030--Hb_001318_150 Hb_003147_070 Hb_003147_070 Hb_012545_030--Hb_003147_070 Hb_006452_180 Hb_006452_180 Hb_004659_010--Hb_006452_180 Hb_000137_010 Hb_000137_010 Hb_004659_010--Hb_000137_010 Hb_001009_120 Hb_001009_120 Hb_004659_010--Hb_001009_120 Hb_000086_270 Hb_000086_270 Hb_004659_010--Hb_000086_270 Hb_010287_020 Hb_010287_020 Hb_004659_010--Hb_010287_020 Hb_000230_460 Hb_000230_460 Hb_004659_010--Hb_000230_460 Hb_001155_050--Hb_011671_340 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46584 6.77056 13.3914 4.37068 0.497614 2.15486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1792 3.10545 2.22179 2.72966 4.21751

CAGE analysis