Hb_001511_040

Information

Type -
Description -
Location Contig1511: 90032-90568
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19280g
description POPTRDRAFT_659473; hypothetical protein
nr
ID XP_012086937.1
description PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
swissprot
ID P93013
description Non-classical arabinogalactan protein 30 OS=Arabidopsis thaliana GN=AGP30 PE=2 SV=1
trembl
ID B9HSK7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19280g PE=4 SV=1
Gene Ontology
ID GO:0048767
description pistil-specific extensin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_040 0.0 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
2 Hb_002421_170 0.0131612388 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
3 Hb_000648_090 0.0220014558 - - -
4 Hb_000692_240 0.0270859098 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
5 Hb_020327_010 0.0308580344 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
6 Hb_035265_020 0.0328432602 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_049187_010 0.035558221 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_177343_020 0.0478124299 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
9 Hb_004643_030 0.0542046409 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004567_080 0.0542667104 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
11 Hb_007741_060 0.0596526688 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
12 Hb_012758_010 0.0678512554 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
13 Hb_002818_140 0.0679222173 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005271_210 0.0711646631 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
15 Hb_000627_060 0.0745348264 - - -
16 Hb_006435_020 0.0763625474 - - sugar transporter, putative [Ricinus communis]
17 Hb_011994_050 0.0769391849 - - multicopper oxidase, putative [Ricinus communis]
18 Hb_004870_030 0.0781635957 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000612_060 0.0809668079 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_000383_040 0.0810864569 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_001511_040 Hb_001511_040 Hb_002421_170 Hb_002421_170 Hb_001511_040--Hb_002421_170 Hb_000648_090 Hb_000648_090 Hb_001511_040--Hb_000648_090 Hb_000692_240 Hb_000692_240 Hb_001511_040--Hb_000692_240 Hb_020327_010 Hb_020327_010 Hb_001511_040--Hb_020327_010 Hb_035265_020 Hb_035265_020 Hb_001511_040--Hb_035265_020 Hb_049187_010 Hb_049187_010 Hb_001511_040--Hb_049187_010 Hb_002421_170--Hb_000648_090 Hb_002421_170--Hb_035265_020 Hb_177343_020 Hb_177343_020 Hb_002421_170--Hb_177343_020 Hb_002421_170--Hb_000692_240 Hb_004643_030 Hb_004643_030 Hb_002421_170--Hb_004643_030 Hb_000648_090--Hb_035265_020 Hb_000648_090--Hb_177343_020 Hb_000648_090--Hb_004643_030 Hb_004567_080 Hb_004567_080 Hb_000648_090--Hb_004567_080 Hb_000692_240--Hb_020327_010 Hb_000692_240--Hb_049187_010 Hb_012758_010 Hb_012758_010 Hb_000692_240--Hb_012758_010 Hb_002818_140 Hb_002818_140 Hb_000692_240--Hb_002818_140 Hb_020327_010--Hb_049187_010 Hb_020327_010--Hb_012758_010 Hb_020327_010--Hb_002818_140 Hb_005271_210 Hb_005271_210 Hb_020327_010--Hb_005271_210 Hb_035265_020--Hb_177343_020 Hb_035265_020--Hb_004643_030 Hb_035265_020--Hb_004567_080 Hb_049187_010--Hb_012758_010 Hb_049187_010--Hb_002818_140 Hb_049187_010--Hb_005271_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.123047 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.07041

CAGE analysis