Hb_001511_110

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig1511: 153059-154343
Sequence    

Annotation

kegg
ID rcu:RCOM_0839570
description transcription factor, putative
nr
ID XP_012087029.1
description PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067LJD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12768: 153196-153406 , PASA_asmbl_12769: 151497-154228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_110 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
2 Hb_029223_050 0.0777766166 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
3 Hb_000340_110 0.0799898201 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
4 Hb_001141_370 0.0860890202 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
5 Hb_000832_320 0.0873920124 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
6 Hb_000243_380 0.0894102017 - - PREDICTED: histone H1 [Jatropha curcas]
7 Hb_004371_010 0.0901860961 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
8 Hb_144824_010 0.0959728031 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
9 Hb_000544_060 0.0977588003 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_026198_040 0.1047434317 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
11 Hb_000932_070 0.1051926125 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
12 Hb_006663_040 0.1060919434 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
13 Hb_012226_010 0.1064153659 - - PREDICTED: protein DGCR14 [Jatropha curcas]
14 Hb_004480_040 0.107046149 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
15 Hb_000236_220 0.109355497 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
16 Hb_052764_060 0.109984849 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_000735_160 0.1110519506 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
18 Hb_104265_030 0.1116036702 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
19 Hb_000061_490 0.1143870881 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
20 Hb_005260_010 0.1144764565 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_110 Hb_001511_110 Hb_029223_050 Hb_029223_050 Hb_001511_110--Hb_029223_050 Hb_000340_110 Hb_000340_110 Hb_001511_110--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_029223_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_029223_050--Hb_026198_040 Hb_029223_050--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_000544_060 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_006663_040 Hb_006663_040 Hb_000832_320--Hb_006663_040 Hb_018133_050 Hb_018133_050 Hb_000832_320--Hb_018133_050 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_052764_060 Hb_052764_060 Hb_000832_320--Hb_052764_060 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_000243_380--Hb_000340_110 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_000243_380--Hb_002745_010 Hb_000243_380--Hb_144824_010 Hb_000094_320 Hb_000094_320 Hb_004371_010--Hb_000094_320 Hb_000061_490 Hb_000061_490 Hb_004371_010--Hb_000061_490 Hb_000768_180 Hb_000768_180 Hb_004371_010--Hb_000768_180 Hb_144744_010 Hb_144744_010 Hb_004371_010--Hb_144744_010 Hb_000347_120 Hb_000347_120 Hb_004371_010--Hb_000347_120 Hb_000735_160 Hb_000735_160 Hb_004371_010--Hb_000735_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3832 92.6676 16.8874 13.7923 37.8662 37.3624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.746 14.076 13.6155 26.5567 20.6881

CAGE analysis