Hb_001511_140

Information

Type -
Description -
Location Contig1511: 201259-201783
Sequence    

Annotation

kegg
ID rcu:RCOM_0838840
description RING-H2 finger protein ATL2N, putative
nr
ID XP_012087052.1
description PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
swissprot
ID Q9SRM0
description RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1
trembl
ID A0A067LC17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01233 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl66

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12770: 201404-201718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_140 0.0 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
2 Hb_000788_080 0.1196786044 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
3 Hb_001776_170 0.1283608536 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000979_250 0.1311650895 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012053_040 0.1446363228 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
6 Hb_002759_240 0.1464319223 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
7 Hb_000592_060 0.1478118628 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
8 Hb_000261_450 0.1481161709 - - Pectinesterase U1 precursor, putative [Ricinus communis]
9 Hb_001159_200 0.1532771073 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
10 Hb_000613_160 0.1543814111 - - coated vesicle membrane protein, putative [Ricinus communis]
11 Hb_000103_550 0.1582109228 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
12 Hb_003095_070 0.1604392652 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
13 Hb_000318_490 0.1606605677 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
14 Hb_001863_420 0.161168175 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
15 Hb_000270_620 0.1619258331 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_002876_370 0.1631968337 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
17 Hb_002704_050 0.1659129093 - - cysteine-type peptidase, putative [Ricinus communis]
18 Hb_003086_060 0.1662557102 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
19 Hb_001369_450 0.1667401276 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_005000_160 0.1670963207 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_140 Hb_001511_140 Hb_000788_080 Hb_000788_080 Hb_001511_140--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_001511_140--Hb_001776_170 Hb_000979_250 Hb_000979_250 Hb_001511_140--Hb_000979_250 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_002759_240 Hb_002759_240 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_002067_140 Hb_002067_140 Hb_001776_170--Hb_002067_140 Hb_001369_600 Hb_001369_600 Hb_001776_170--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_001776_170--Hb_012053_050 Hb_001776_170--Hb_002759_240 Hb_001776_170--Hb_000979_250 Hb_008066_030 Hb_008066_030 Hb_000979_250--Hb_008066_030 Hb_000979_250--Hb_000613_160 Hb_003198_010 Hb_003198_010 Hb_000979_250--Hb_003198_010 Hb_001488_370 Hb_001488_370 Hb_000979_250--Hb_001488_370 Hb_007426_050 Hb_007426_050 Hb_012053_040--Hb_007426_050 Hb_012053_040--Hb_000788_080 Hb_012053_040--Hb_001776_170 Hb_001143_070 Hb_001143_070 Hb_012053_040--Hb_001143_070 Hb_000111_010 Hb_000111_010 Hb_012053_040--Hb_000111_010 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_000264_020 Hb_000264_020 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_002704_050 Hb_002704_050 Hb_000592_060--Hb_002704_050 Hb_000431_160 Hb_000431_160 Hb_000592_060--Hb_000431_160 Hb_000318_490 Hb_000318_490 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000281_230 Hb_000281_230 Hb_000592_060--Hb_000281_230 Hb_004545_130 Hb_004545_130 Hb_000592_060--Hb_004545_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9462 4.66547 1.393 2.40762 1.91203 2.81801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6568 53.8857 36.8337 3.5092 3.12918

CAGE analysis