Hb_001511_150

Information

Type -
Description -
Location Contig1511: 204930-207654
Sequence    

Annotation

kegg
ID rcu:RCOM_0687700
description monovalent cation:proton antiporter, putative
nr
ID XP_002520801.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9SIT5
description Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
trembl
ID B9S482
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_0687700 PE=4 SV=1
Gene Ontology
ID GO:0015672
description cation h(+) antiporter 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_150 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_000925_030 0.1316290728 - - ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000002_240 0.1359338121 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
4 Hb_003147_060 0.1366509031 - - syntaxin, plant, putative [Ricinus communis]
5 Hb_000111_180 0.1467257208 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_001671_040 0.147041929 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
7 Hb_000011_050 0.1519309731 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
8 Hb_002248_030 0.159768073 - - metallothionein-like protein [Hevea brasiliensis]
9 Hb_002228_110 0.1658232898 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
10 Hb_007254_020 0.1665710131 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
11 Hb_000375_290 0.167995196 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_008225_090 0.1681872755 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
13 Hb_004648_090 0.1683529645 - - peroxisomal biogenesis factor, putative [Ricinus communis]
14 Hb_002092_120 0.1687242469 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
15 Hb_000230_460 0.1688225937 - - Speckle-type POZ protein, putative [Ricinus communis]
16 Hb_001863_140 0.1690551903 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
17 Hb_000363_350 0.1717898856 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
18 Hb_018790_080 0.1724014401 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
19 Hb_002107_060 0.1760027771 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
20 Hb_006452_180 0.1772552993 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_001511_150 Hb_001511_150 Hb_000925_030 Hb_000925_030 Hb_001511_150--Hb_000925_030 Hb_000002_240 Hb_000002_240 Hb_001511_150--Hb_000002_240 Hb_003147_060 Hb_003147_060 Hb_001511_150--Hb_003147_060 Hb_000111_180 Hb_000111_180 Hb_001511_150--Hb_000111_180 Hb_001671_040 Hb_001671_040 Hb_001511_150--Hb_001671_040 Hb_000011_050 Hb_000011_050 Hb_001511_150--Hb_000011_050 Hb_000925_030--Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_000925_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030 Hb_000002_240--Hb_000111_180 Hb_000002_240--Hb_003147_060 Hb_002110_160 Hb_002110_160 Hb_000002_240--Hb_002110_160 Hb_010775_030 Hb_010775_030 Hb_000002_240--Hb_010775_030 Hb_000375_290 Hb_000375_290 Hb_000002_240--Hb_000375_290 Hb_004870_050 Hb_004870_050 Hb_000002_240--Hb_004870_050 Hb_003147_060--Hb_003925_040 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_003147_060--Hb_004108_240 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090 Hb_000318_480 Hb_000318_480 Hb_000111_180--Hb_000318_480 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_014068_050 Hb_014068_050 Hb_000111_180--Hb_014068_050 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110 Hb_000035_250 Hb_000035_250 Hb_001671_040--Hb_000035_250 Hb_001953_070 Hb_001953_070 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_004648_090 Hb_004648_090 Hb_001671_040--Hb_004648_090 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000011_050--Hb_000925_030 Hb_000363_350 Hb_000363_350 Hb_000011_050--Hb_000363_350 Hb_000979_060 Hb_000979_060 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0684513 0.360123 0.331415 0.124922 0.104831 0.108606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161151 0.301156 0.0301359 0.100802 0.10078

CAGE analysis