Hb_001511_160

Information

Type -
Description -
Location Contig1511: 208441-213068
Sequence    

Annotation

kegg
ID rcu:RCOM_0838600
description hypothetical protein
nr
ID XP_002528313.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQP4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0838600 PE=4 SV=1
Gene Ontology
ID GO:0044237
description differentiation-associated protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12771: 209202-212884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006501_050 0.096910425 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
3 Hb_000003_170 0.1023303241 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
4 Hb_005162_110 0.1050920416 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
5 Hb_000959_220 0.1113780955 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000012_270 0.1128596946 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
7 Hb_001824_080 0.1138765252 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
8 Hb_007821_020 0.1145136142 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
9 Hb_004339_040 0.1177193238 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
10 Hb_171900_040 0.1200792244 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
11 Hb_002874_180 0.1207076332 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
12 Hb_005649_100 0.1217130322 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_010931_070 0.1240133887 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
14 Hb_000567_070 0.12496606 - - autophagy protein, putative [Ricinus communis]
15 Hb_001675_300 0.1251022208 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
16 Hb_006061_040 0.1251028408 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
17 Hb_000416_200 0.1257356071 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
18 Hb_000880_070 0.1257784015 - - gamma-tubulin complex component, putative [Ricinus communis]
19 Hb_000847_080 0.1263727977 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
20 Hb_001025_120 0.1268296727 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_160 Hb_001511_160 Hb_006501_050 Hb_006501_050 Hb_001511_160--Hb_006501_050 Hb_000003_170 Hb_000003_170 Hb_001511_160--Hb_000003_170 Hb_005162_110 Hb_005162_110 Hb_001511_160--Hb_005162_110 Hb_000959_220 Hb_000959_220 Hb_001511_160--Hb_000959_220 Hb_000012_270 Hb_000012_270 Hb_001511_160--Hb_000012_270 Hb_001824_080 Hb_001824_080 Hb_001511_160--Hb_001824_080 Hb_004339_040 Hb_004339_040 Hb_006501_050--Hb_004339_040 Hb_000880_070 Hb_000880_070 Hb_006501_050--Hb_000880_070 Hb_000364_100 Hb_000364_100 Hb_006501_050--Hb_000364_100 Hb_029388_010 Hb_029388_010 Hb_006501_050--Hb_029388_010 Hb_006501_050--Hb_001824_080 Hb_000003_170--Hb_005162_110 Hb_002874_180 Hb_002874_180 Hb_000003_170--Hb_002874_180 Hb_001703_040 Hb_001703_040 Hb_000003_170--Hb_001703_040 Hb_005946_040 Hb_005946_040 Hb_000003_170--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_000003_170--Hb_000163_260 Hb_004109_120 Hb_004109_120 Hb_000003_170--Hb_004109_120 Hb_005162_110--Hb_005946_040 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_000959_220--Hb_005731_110 Hb_000959_220--Hb_000012_270 Hb_065755_030 Hb_065755_030 Hb_000959_220--Hb_065755_030 Hb_001322_020 Hb_001322_020 Hb_000959_220--Hb_001322_020 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_003228_100 Hb_003228_100 Hb_000012_270--Hb_003228_100 Hb_005649_100 Hb_005649_100 Hb_000012_270--Hb_005649_100 Hb_000012_270--Hb_005731_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020 Hb_001824_080--Hb_004109_120 Hb_000254_100 Hb_000254_100 Hb_001824_080--Hb_000254_100 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_001824_080--Hb_004339_040 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29321 2.99079 14.0332 4.6658 6.79112 4.8022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24732 5.108 4.25999 4.06028 5.87755

CAGE analysis