Hb_001511_180

Information

Type -
Description -
Location Contig1511: 218079-230759
Sequence    

Annotation

kegg
ID rcu:RCOM_0838580
description clathrin heavy chain, putative
nr
ID KHG11889.1
description Clathrin heavy chain 2 -like protein [Gossypium arboreum]
swissprot
ID Q2RBN7
description Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica GN=Os11g0104900 PE=3 SV=1
trembl
ID A0A0B2SUM5
description Clathrin heavy chain 2 OS=Glycine soja GN=glysoja_034198 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin heavy chain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12773: 218070-230752 , PASA_asmbl_12774: 229812-229929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_180 0.0 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
2 Hb_009476_120 0.0687068263 - - Clathrin heavy chain 1 [Glycine soja]
3 Hb_033799_010 0.0719472101 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
4 Hb_002817_060 0.0719788418 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
5 Hb_005074_020 0.0732222839 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
6 Hb_000890_070 0.0743691949 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
7 Hb_000347_300 0.0751133588 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
8 Hb_002686_140 0.079794736 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_000080_110 0.0798610134 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
10 Hb_001646_020 0.0811451168 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X2 [Jatropha curcas]
11 Hb_000649_060 0.0814267088 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
12 Hb_003340_010 0.0814653596 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
13 Hb_000599_360 0.0816901889 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_004884_090 0.0825263513 - - importin beta-1, putative [Ricinus communis]
15 Hb_007245_020 0.0829711186 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
16 Hb_001587_030 0.0830647435 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
17 Hb_009615_160 0.0831772809 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
18 Hb_019280_010 0.0839461211 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
19 Hb_103684_010 0.0847194679 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
20 Hb_001828_170 0.0869791083 - - PREDICTED: protein TPLATE [Jatropha curcas]

Gene co-expression network

sample Hb_001511_180 Hb_001511_180 Hb_009476_120 Hb_009476_120 Hb_001511_180--Hb_009476_120 Hb_033799_010 Hb_033799_010 Hb_001511_180--Hb_033799_010 Hb_002817_060 Hb_002817_060 Hb_001511_180--Hb_002817_060 Hb_005074_020 Hb_005074_020 Hb_001511_180--Hb_005074_020 Hb_000890_070 Hb_000890_070 Hb_001511_180--Hb_000890_070 Hb_000347_300 Hb_000347_300 Hb_001511_180--Hb_000347_300 Hb_001414_010 Hb_001414_010 Hb_009476_120--Hb_001414_010 Hb_008165_020 Hb_008165_020 Hb_009476_120--Hb_008165_020 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010 Hb_000080_110 Hb_000080_110 Hb_033799_010--Hb_000080_110 Hb_171554_040 Hb_171554_040 Hb_033799_010--Hb_171554_040 Hb_000049_250 Hb_000049_250 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_033799_010--Hb_005074_020 Hb_002817_060--Hb_000347_300 Hb_001828_170 Hb_001828_170 Hb_002817_060--Hb_001828_170 Hb_001329_250 Hb_001329_250 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_000347_300--Hb_001828_170 Hb_022425_030 Hb_022425_030 Hb_000347_300--Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_000347_300--Hb_004044_050 Hb_022425_060 Hb_022425_060 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5669 45.0154 31.3821 53.0956 19.5417 23.3666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6325 11.9773 27.0342 49.2964 48.6268

CAGE analysis