Hb_001511_190

Information

Type -
Description -
Location Contig1511: 233340-235249
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19430g
description POPTRDRAFT_833758; hypothetical protein
nr
ID XP_012087081.1
description PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
swissprot
ID Q9XEE8
description Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1
trembl
ID A0A067LC20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01238 PE=3 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12775: 233275-234390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_190 0.0 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
2 Hb_000008_110 0.128949867 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
3 Hb_000345_500 0.1513847949 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
4 Hb_001507_030 0.153667629 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
5 Hb_002759_260 0.1538335103 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
6 Hb_012107_010 0.156171351 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
7 Hb_002875_070 0.1652819153 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
8 Hb_003077_050 0.1682796826 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
9 Hb_000417_420 0.1689630974 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
10 Hb_005663_070 0.1710793075 - - dehydrin protein [Manihot esculenta]
11 Hb_001956_190 0.1739958582 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_006916_200 0.1819282437 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
13 Hb_005545_070 0.1847806131 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_000069_330 0.1918205985 - - protein with unknown function [Ricinus communis]
15 Hb_003531_040 0.1922471213 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_009557_050 0.1942034449 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
17 Hb_005714_100 0.1967331662 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
18 Hb_009421_050 0.1971409206 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
19 Hb_002053_130 0.1979692542 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
20 Hb_002450_030 0.2008497989 - - ATPP2-A13, putative [Ricinus communis]

Gene co-expression network

sample Hb_001511_190 Hb_001511_190 Hb_000008_110 Hb_000008_110 Hb_001511_190--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_001511_190--Hb_000345_500 Hb_001507_030 Hb_001507_030 Hb_001511_190--Hb_001507_030 Hb_002759_260 Hb_002759_260 Hb_001511_190--Hb_002759_260 Hb_012107_010 Hb_012107_010 Hb_001511_190--Hb_012107_010 Hb_002875_070 Hb_002875_070 Hb_001511_190--Hb_002875_070 Hb_005545_070 Hb_005545_070 Hb_000008_110--Hb_005545_070 Hb_006916_200 Hb_006916_200 Hb_000008_110--Hb_006916_200 Hb_000417_420 Hb_000417_420 Hb_000008_110--Hb_000417_420 Hb_005663_070 Hb_005663_070 Hb_000008_110--Hb_005663_070 Hb_000008_110--Hb_012107_010 Hb_002053_030 Hb_002053_030 Hb_000345_500--Hb_002053_030 Hb_000776_050 Hb_000776_050 Hb_000345_500--Hb_000776_050 Hb_006043_020 Hb_006043_020 Hb_000345_500--Hb_006043_020 Hb_006538_030 Hb_006538_030 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_001863_270 Hb_001863_270 Hb_000345_500--Hb_001863_270 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_003020_180 Hb_003020_180 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_001507_030--Hb_002759_260 Hb_002759_260--Hb_002875_070 Hb_023344_110 Hb_023344_110 Hb_002759_260--Hb_023344_110 Hb_003849_190 Hb_003849_190 Hb_002759_260--Hb_003849_190 Hb_002759_260--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_002759_260--Hb_000042_330 Hb_002053_130 Hb_002053_130 Hb_012107_010--Hb_002053_130 Hb_012107_010--Hb_001944_020 Hb_012107_010--Hb_000417_420 Hb_002639_100 Hb_002639_100 Hb_012107_010--Hb_002639_100 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_003747_210 Hb_003747_210 Hb_012107_010--Hb_003747_210 Hb_005714_100 Hb_005714_100 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03215 48.0359 10.3497 27.9592 0.540953 1.33738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2655 8.31412 7.83972 2.78223 5.02661

CAGE analysis