Hb_001511_220

Information

Type -
Description -
Location Contig1511: 266012-267864
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06990g
description POPTRDRAFT_564043; hypothetical protein
nr
ID XP_002311231.2
description hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
swissprot
ID Q9LY46
description Protein ESKIMO 1 OS=Arabidopsis thaliana GN=ESK1 PE=1 SV=1
trembl
ID B9HHR1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06990g PE=4 SV=2
Gene Ontology
ID GO:0050826
description protein eskimo 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12783: 266304-267083 , PASA_asmbl_12784: 267448-267683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_220 0.0 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
2 Hb_011224_070 0.0625747603 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
3 Hb_003747_160 0.0647015762 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009476_080 0.0649845117 - - BnaA03g18920D [Brassica napus]
5 Hb_004650_120 0.0675440983 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
6 Hb_002835_360 0.0705566033 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
7 Hb_002499_030 0.07263381 - - receptor-kinase, putative [Ricinus communis]
8 Hb_001096_010 0.0751043988 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
9 Hb_135052_010 0.0753852635 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_182869_010 0.0755484553 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_001104_060 0.0764249484 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
12 Hb_005614_020 0.0808207474 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
13 Hb_015807_090 0.0829584106 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
14 Hb_000368_050 0.0857657662 - - beta-galactosidase, putative [Ricinus communis]
15 Hb_004225_120 0.0858629017 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
16 Hb_001269_160 0.086074096 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003376_060 0.0862168239 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
18 Hb_001195_710 0.0892589726 - - glycosyltransferase family GT8 protein [Populus deltoides]
19 Hb_002078_180 0.0893309028 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
20 Hb_005711_030 0.0903659134 - - hypothetical protein RCOM_0460020 [Ricinus communis]

Gene co-expression network

sample Hb_001511_220 Hb_001511_220 Hb_011224_070 Hb_011224_070 Hb_001511_220--Hb_011224_070 Hb_003747_160 Hb_003747_160 Hb_001511_220--Hb_003747_160 Hb_009476_080 Hb_009476_080 Hb_001511_220--Hb_009476_080 Hb_004650_120 Hb_004650_120 Hb_001511_220--Hb_004650_120 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_002499_030 Hb_002499_030 Hb_001511_220--Hb_002499_030 Hb_011224_070--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_011224_070--Hb_005614_020 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_015807_090 Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_003747_160--Hb_009476_080 Hb_003747_160--Hb_004225_120 Hb_002078_180 Hb_002078_180 Hb_009476_080--Hb_002078_180 Hb_009476_080--Hb_015807_090 Hb_009476_080--Hb_002835_360 Hb_009476_080--Hb_005686_040 Hb_009476_080--Hb_001051_060 Hb_000009_280 Hb_000009_280 Hb_004650_120--Hb_000009_280 Hb_000676_230 Hb_000676_230 Hb_004650_120--Hb_000676_230 Hb_004032_290 Hb_004032_290 Hb_004650_120--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004650_120--Hb_001104_060 Hb_007185_050 Hb_007185_050 Hb_004650_120--Hb_007185_050 Hb_002835_360--Hb_002078_180 Hb_002835_360--Hb_005686_040 Hb_002835_360--Hb_003747_160 Hb_002835_360--Hb_015807_090 Hb_002835_360--Hb_001051_060 Hb_002499_030--Hb_001096_010 Hb_002499_030--Hb_005614_020 Hb_070771_010 Hb_070771_010 Hb_002499_030--Hb_070771_010 Hb_002499_030--Hb_003747_160 Hb_003638_020 Hb_003638_020 Hb_002499_030--Hb_003638_020 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0191814 3.25442 6.41507 47.8238 0.0372081 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.926887 26.2406

CAGE analysis