Hb_001511_250

Information

Type -
Description -
Location Contig1511: 287394-290317
Sequence    

Annotation

kegg
ID rcu:RCOM_0838160
description Omega-3 fatty acid desaturase, chloroplast precursor (EC:1.14.99.33)
nr
ID AGC51776.1
description fatty acid desaturase [Manihot esculenta]
swissprot
ID P48619
description Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1
trembl
ID V9M596
description Fatty acid desaturase OS=Manihot esculenta GN=FAD7 PE=2 SV=1
Gene Ontology
ID GO:0031969
description omega-3 fatty acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12788: 280931-286481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_250 0.0 - - fatty acid desaturase [Manihot esculenta]
2 Hb_119316_020 0.0484212299 - - -
3 Hb_001636_060 0.0863680562 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
4 Hb_005080_020 0.1514493267 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_031108_010 0.1582295147 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
6 Hb_000020_070 0.1626413876 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
7 Hb_000086_620 0.1650540631 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
8 Hb_009189_050 0.1660731736 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
9 Hb_001579_070 0.16625029 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
10 Hb_001898_130 0.1689280304 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001623_410 0.1712847449 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
12 Hb_001242_180 0.1735822862 - - choline/ethanolamine kinase, putative [Ricinus communis]
13 Hb_001369_020 0.1736319575 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
14 Hb_007218_060 0.175868889 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
15 Hb_001226_170 0.1812867729 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_009476_110 0.1844526279 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
17 Hb_073171_050 0.1883423818 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
18 Hb_028285_020 0.190686656 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
19 Hb_001294_050 0.1932316981 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
20 Hb_011930_120 0.194339693 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_250 Hb_001511_250 Hb_119316_020 Hb_119316_020 Hb_001511_250--Hb_119316_020 Hb_001636_060 Hb_001636_060 Hb_001511_250--Hb_001636_060 Hb_005080_020 Hb_005080_020 Hb_001511_250--Hb_005080_020 Hb_031108_010 Hb_031108_010 Hb_001511_250--Hb_031108_010 Hb_000020_070 Hb_000020_070 Hb_001511_250--Hb_000020_070 Hb_000086_620 Hb_000086_620 Hb_001511_250--Hb_000086_620 Hb_119316_020--Hb_001636_060 Hb_119316_020--Hb_000086_620 Hb_001579_070 Hb_001579_070 Hb_119316_020--Hb_001579_070 Hb_119316_020--Hb_031108_010 Hb_001242_180 Hb_001242_180 Hb_119316_020--Hb_001242_180 Hb_001636_060--Hb_031108_010 Hb_001636_060--Hb_000020_070 Hb_001636_060--Hb_005080_020 Hb_001898_130 Hb_001898_130 Hb_001636_060--Hb_001898_130 Hb_048476_040 Hb_048476_040 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_009476_110 Hb_009476_110 Hb_031108_010--Hb_009476_110 Hb_000776_050 Hb_000776_050 Hb_031108_010--Hb_000776_050 Hb_124677_020 Hb_124677_020 Hb_031108_010--Hb_124677_020 Hb_031108_010--Hb_001579_070 Hb_155946_030 Hb_155946_030 Hb_031108_010--Hb_155946_030 Hb_031108_010--Hb_000086_620 Hb_001247_020 Hb_001247_020 Hb_000020_070--Hb_001247_020 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_000020_070--Hb_005080_020 Hb_000020_070--Hb_119316_020 Hb_000086_620--Hb_001623_410 Hb_011930_120 Hb_011930_120 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_001247_010 Hb_001247_010 Hb_000086_620--Hb_001247_010 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.685452 175.681 137.554 71.4686 0.035564 0.194594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.06664 29.2203 28.1507 17.8377 53.7034

CAGE analysis