Hb_001511_270

Information

Type transcription factor
Description TF Family: C3H
Location Contig1511: 296339-298366
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06940g
description hypothetical protein
nr
ID XP_012087294.1
description PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
swissprot
ID Q9XEE6
description Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1
trembl
ID A0A067LJF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01255 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12791: 295930-299276
cDNA
(Sanger)
(ID:Location)		 002_M20.ab1: 297713-299117 , 013_F16.ab1: 297788-299115 , 032_J15.ab1: 297812-299115

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_270 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
2 Hb_004242_160 0.0843460925 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
3 Hb_116349_090 0.1018689848 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
4 Hb_002849_030 0.1058768364 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
5 Hb_001477_080 0.107402602 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
6 Hb_009189_010 0.1110524873 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
7 Hb_000260_130 0.1137965266 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
8 Hb_029238_020 0.1152323717 - - PREDICTED: expansin-like A1 [Jatropha curcas]
9 Hb_073870_020 0.1163090793 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
10 Hb_000347_360 0.1171349157 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
11 Hb_000322_020 0.1181198034 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
12 Hb_010417_120 0.1193405348 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009476_010 0.1272168518 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
14 Hb_000060_100 0.127665902 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
15 Hb_000529_050 0.1312972231 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
16 Hb_000245_270 0.1341442455 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
17 Hb_008550_030 0.1344881466 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
18 Hb_005714_140 0.1350012386 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_011287_020 0.1412923794 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000422_050 0.1413603758 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_270 Hb_001511_270 Hb_004242_160 Hb_004242_160 Hb_001511_270--Hb_004242_160 Hb_116349_090 Hb_116349_090 Hb_001511_270--Hb_116349_090 Hb_002849_030 Hb_002849_030 Hb_001511_270--Hb_002849_030 Hb_001477_080 Hb_001477_080 Hb_001511_270--Hb_001477_080 Hb_009189_010 Hb_009189_010 Hb_001511_270--Hb_009189_010 Hb_000260_130 Hb_000260_130 Hb_001511_270--Hb_000260_130 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_004242_160--Hb_001477_080 Hb_001098_020 Hb_001098_020 Hb_004242_160--Hb_001098_020 Hb_000529_050 Hb_000529_050 Hb_004242_160--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_004242_160--Hb_000313_190 Hb_000805_150 Hb_000805_150 Hb_116349_090--Hb_000805_150 Hb_000245_270 Hb_000245_270 Hb_116349_090--Hb_000245_270 Hb_029238_020 Hb_029238_020 Hb_116349_090--Hb_029238_020 Hb_116349_090--Hb_004242_160 Hb_116349_090--Hb_001477_080 Hb_000347_360 Hb_000347_360 Hb_002849_030--Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_002849_030--Hb_073870_020 Hb_000322_020 Hb_000322_020 Hb_002849_030--Hb_000322_020 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_048538_010 Hb_048538_010 Hb_002849_030--Hb_048538_010 Hb_001477_080--Hb_000529_050 Hb_001477_080--Hb_000313_190 Hb_002922_010 Hb_002922_010 Hb_001477_080--Hb_002922_010 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_001477_080--Hb_000322_020 Hb_001411_150 Hb_001411_150 Hb_009189_010--Hb_001411_150 Hb_009189_010--Hb_073870_020 Hb_007383_050 Hb_007383_050 Hb_009189_010--Hb_007383_050 Hb_009189_010--Hb_000347_360 Hb_001289_030 Hb_001289_030 Hb_009189_010--Hb_001289_030 Hb_005714_140 Hb_005714_140 Hb_000260_130--Hb_005714_140 Hb_161045_010 Hb_161045_010 Hb_000260_130--Hb_161045_010 Hb_002267_030 Hb_002267_030 Hb_000260_130--Hb_002267_030 Hb_000260_130--Hb_004242_160 Hb_007305_040 Hb_007305_040 Hb_000260_130--Hb_007305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3586 1244.88 168.644 290.382 1.86221 2.51061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22237 3.26988 5.87131 24.1157 113.459

CAGE analysis