Hb_001512_010

Information

Type -
Description -
Location Contig1512: 1922-14281
Sequence    

Annotation

kegg
ID cit:102610957
description SAGA-associated factor 29-like
nr
ID XP_012071805.1
description PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
swissprot
ID Q96ES7
description SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1 SV=1
trembl
ID A0A067LNG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10235 PE=4 SV=1
Gene Ontology
ID GO:0005634
description sgf29 tudor-like domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12796: 2468-2918 , PASA_asmbl_12797: 1845-14262 , PASA_asmbl_12798: 1845-14262
cDNA
(Sanger)
(ID:Location)		 007_P10.ab1: 1845-12909 , 042_B18.ab1: 1845-12914 , 050_H14.ab1: 1845-12911 , 050_I14.ab1: 1845-4559 , 053_L06.ab1: 2468-2918

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_010 0.0 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
2 Hb_000483_300 0.0824439679 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
3 Hb_008103_050 0.0860931979 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
4 Hb_001366_180 0.0939431729 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
5 Hb_006478_020 0.0950470852 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_023371_020 0.0982537421 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
7 Hb_000329_210 0.0995014328 - - Golgi snare 12 isoform 1 [Theobroma cacao]
8 Hb_011214_090 0.0998648136 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
9 Hb_000994_120 0.1020217513 - - unknown [Populus trichocarpa]
10 Hb_076233_040 0.1024866061 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
11 Hb_024128_020 0.1039927592 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
12 Hb_001307_030 0.1049241048 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
13 Hb_006274_030 0.1049904891 - - F-box and wd40 domain protein, putative [Ricinus communis]
14 Hb_005144_050 0.1052449174 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
15 Hb_004935_060 0.106205448 - - Uncharacterized protein isoform 2 [Theobroma cacao]
16 Hb_002289_080 0.1065010223 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
17 Hb_000335_030 0.1073672933 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
18 Hb_000029_140 0.1104784961 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
19 Hb_006420_080 0.1118086675 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_004191_020 0.1132000441 - - PREDICTED: cysteine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_001512_010 Hb_001512_010 Hb_000483_300 Hb_000483_300 Hb_001512_010--Hb_000483_300 Hb_008103_050 Hb_008103_050 Hb_001512_010--Hb_008103_050 Hb_001366_180 Hb_001366_180 Hb_001512_010--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_001512_010--Hb_006478_020 Hb_023371_020 Hb_023371_020 Hb_001512_010--Hb_023371_020 Hb_000329_210 Hb_000329_210 Hb_001512_010--Hb_000329_210 Hb_000347_240 Hb_000347_240 Hb_000483_300--Hb_000347_240 Hb_001189_070 Hb_001189_070 Hb_000483_300--Hb_001189_070 Hb_004157_050 Hb_004157_050 Hb_000483_300--Hb_004157_050 Hb_000483_300--Hb_001366_180 Hb_000483_300--Hb_023371_020 Hb_000053_020 Hb_000053_020 Hb_000483_300--Hb_000053_020 Hb_000994_120 Hb_000994_120 Hb_008103_050--Hb_000994_120 Hb_008103_050--Hb_000483_300 Hb_008103_050--Hb_004157_050 Hb_004044_040 Hb_004044_040 Hb_008103_050--Hb_004044_040 Hb_066842_010 Hb_066842_010 Hb_008103_050--Hb_066842_010 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_001366_180--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_003878_090 Hb_003878_090 Hb_023371_020--Hb_003878_090 Hb_001141_420 Hb_001141_420 Hb_023371_020--Hb_001141_420 Hb_004545_110 Hb_004545_110 Hb_023371_020--Hb_004545_110 Hb_023371_020--Hb_004157_050 Hb_133702_010 Hb_133702_010 Hb_023371_020--Hb_133702_010 Hb_000260_350 Hb_000260_350 Hb_023371_020--Hb_000260_350 Hb_076233_040 Hb_076233_040 Hb_000329_210--Hb_076233_040 Hb_001307_030 Hb_001307_030 Hb_000329_210--Hb_001307_030 Hb_004257_010 Hb_004257_010 Hb_000329_210--Hb_004257_010 Hb_002184_090 Hb_002184_090 Hb_000329_210--Hb_002184_090 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_000617_200 Hb_000617_200 Hb_000329_210--Hb_000617_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73095 6.3428 9.38882 20.9299 8.24499 11.6126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0637 12.0319 16.6478 15.0939 20.2762

CAGE analysis