Hb_001512_030

Information

Type -
Description -
Location Contig1512: 19898-22695
Sequence    

Annotation

kegg
ID rcu:RCOM_1065240
description hypothetical protein
nr
ID XP_012071779.1
description PREDICTED: surfeit locus protein 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12799: 20291-20709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_030 0.0 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
2 Hb_000505_040 0.0620247075 - - -
3 Hb_001633_050 0.0660009267 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
4 Hb_007904_260 0.0738330582 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
5 Hb_000985_030 0.0780197931 - - PREDICTED: RRP15-like protein [Populus euphratica]
6 Hb_003605_090 0.0787687981 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
7 Hb_004889_010 0.0799099698 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
8 Hb_003053_020 0.0811061218 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
9 Hb_058999_020 0.0820669608 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
10 Hb_000384_100 0.0822648757 - - hydrolase, putative [Ricinus communis]
11 Hb_000777_040 0.082372141 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_025240_040 0.0831633945 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
13 Hb_005883_060 0.0834593907 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1 [Jatropha curcas]
14 Hb_001140_060 0.0838478018 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
15 Hb_003697_040 0.0843690419 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
16 Hb_000046_320 0.0843815962 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_004116_190 0.0845788834 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
18 Hb_006117_070 0.0854584754 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
19 Hb_017225_020 0.0864952319 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
20 Hb_002183_090 0.0877122424 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001512_030 Hb_001512_030 Hb_000505_040 Hb_000505_040 Hb_001512_030--Hb_000505_040 Hb_001633_050 Hb_001633_050 Hb_001512_030--Hb_001633_050 Hb_007904_260 Hb_007904_260 Hb_001512_030--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_001512_030--Hb_000985_030 Hb_003605_090 Hb_003605_090 Hb_001512_030--Hb_003605_090 Hb_004889_010 Hb_004889_010 Hb_001512_030--Hb_004889_010 Hb_000505_040--Hb_001633_050 Hb_157022_010 Hb_157022_010 Hb_000505_040--Hb_157022_010 Hb_000236_040 Hb_000236_040 Hb_000505_040--Hb_000236_040 Hb_001484_070 Hb_001484_070 Hb_000505_040--Hb_001484_070 Hb_000270_370 Hb_000270_370 Hb_000505_040--Hb_000270_370 Hb_004116_190 Hb_004116_190 Hb_001633_050--Hb_004116_190 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_002995_020 Hb_002995_020 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_000656_240 Hb_000656_240 Hb_001633_050--Hb_000656_240 Hb_000046_320 Hb_000046_320 Hb_007904_260--Hb_000046_320 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_003697_040 Hb_003697_040 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250 Hb_001489_080 Hb_001489_080 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_004889_010--Hb_003697_040 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.802 4.34538 8.06398 8.24782 6.88265 11.9077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8546 21.0073 16.7771 10.6102 8.41079

CAGE analysis