Hb_001512_070

Information

Type -
Description -
Location Contig1512: 78964-82279
Sequence    

Annotation

kegg
ID mdm:103416953
description ras-related protein RABB1b
nr
ID XP_008353384.1
description PREDICTED: ras-related protein RABB1b [Malus domestica]
swissprot
ID Q38922
description Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1
trembl
ID B9SJ79
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1478360 PE=3 SV=1
Gene Ontology
ID GO:0009507
description ras-related protein rabb1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12805: 78956-82155 , PASA_asmbl_12806: 81240-81713
cDNA
(Sanger)
(ID:Location)		 012_J08.ab1: 79092-82147 , 013_M21.ab1: 79026-82147 , 025_G20.ab1: 79029-82147

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_070 0.0 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
2 Hb_003939_080 0.0637732558 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007101_150 0.0694765546 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
4 Hb_001828_090 0.071055942 - - prohibitin, putative [Ricinus communis]
5 Hb_012762_050 0.0753779267 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
6 Hb_002868_010 0.0757902052 - - 60S ribosomal protein L30, putative [Ricinus communis]
7 Hb_000684_090 0.0764296225 transcription factor TF Family: S1Fa-like -
8 Hb_001379_060 0.0781480598 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
9 Hb_000473_040 0.0799162741 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
10 Hb_135545_010 0.0862381508 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000189_270 0.0877582965 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
12 Hb_011360_140 0.0957476614 - - 40S ribosomal protein S19, putative [Ricinus communis]
13 Hb_004645_050 0.0960680593 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
14 Hb_000531_020 0.0997946431 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
15 Hb_000012_220 0.1004205662 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000221_220 0.1004215423 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
17 Hb_003687_110 0.1007666431 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
18 Hb_002007_060 0.1007893472 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
19 Hb_003050_080 0.1016988467 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_001946_210 0.101841469 - - ribosomal protein l7ae, putative [Ricinus communis]

Gene co-expression network

sample Hb_001512_070 Hb_001512_070 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_007101_150 Hb_007101_150 Hb_001512_070--Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_001512_070--Hb_001828_090 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_002868_010 Hb_002868_010 Hb_001512_070--Hb_002868_010 Hb_000684_090 Hb_000684_090 Hb_001512_070--Hb_000684_090 Hb_003939_080--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_003939_080--Hb_001946_210 Hb_011360_140 Hb_011360_140 Hb_003939_080--Hb_011360_140 Hb_002007_060 Hb_002007_060 Hb_003939_080--Hb_002007_060 Hb_003939_080--Hb_001828_090 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001828_090--Hb_000684_090 Hb_135545_010 Hb_135545_010 Hb_012762_050--Hb_135545_010 Hb_000473_040 Hb_000473_040 Hb_012762_050--Hb_000473_040 Hb_012762_050--Hb_000221_220 Hb_012762_050--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_012762_050--Hb_011571_020 Hb_002868_010--Hb_001946_210 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_000270_270 Hb_000270_270 Hb_000684_090--Hb_000270_270 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_000684_090--Hb_011360_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.526 51.8802 49.6367 36.3116 112.105 93.0991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.709 203.019 90.8997 26.0568 16.4379

CAGE analysis