Hb_001514_020

Information

Type -
Description -
Location Contig1514: 7197-14547
Sequence    

Annotation

kegg
ID rcu:RCOM_1589290
description hypothetical protein
nr
ID XP_012068293.1
description PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
swissprot
ID Q42463
description Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1
trembl
ID A0A067KZT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16094 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12819: 7519-13237 , PASA_asmbl_12821: 10960-11086
cDNA
(Sanger)
(ID:Location)		 030_D14.ab1: 7559-13167 , 046_B21.ab1: 7521-13155 , 048_E06.ab1: 7561-13190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_020 0.0 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
2 Hb_003688_100 0.0620658293 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
3 Hb_000847_070 0.0630444957 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
4 Hb_143766_090 0.063455147 - - 60S ribosomal protein L31B [Hevea brasiliensis]
5 Hb_004502_030 0.0733467821 - - unknown [Populus trichocarpa]
6 Hb_007992_030 0.0737966625 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
7 Hb_001623_370 0.0749293353 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004813_010 0.0772827252 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004096_170 0.0800321129 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
10 Hb_004204_030 0.0815980859 - - unknown [Populus trichocarpa]
11 Hb_010449_020 0.0830399328 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
12 Hb_006501_150 0.083366121 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001493_100 0.0839717155 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
14 Hb_000714_020 0.0857867455 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
15 Hb_134226_010 0.087210787 - - 40S ribosomal protein S21e, putative [Ricinus communis]
16 Hb_004374_010 0.092762003 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
17 Hb_007441_340 0.0931360053 - - protein with unknown function [Ricinus communis]
18 Hb_001269_150 0.0950645722 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
19 Hb_002044_090 0.0969670477 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
20 Hb_150069_020 0.0970038997 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001514_020 Hb_001514_020 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_004722_060 Hb_004722_060 Hb_003688_100--Hb_004722_060 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_005489_130 Hb_005489_130 Hb_003688_100--Hb_005489_130 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_004502_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_004502_030--Hb_007992_030 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_007992_030--Hb_000345_560 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_000714_020 Hb_000714_020 Hb_001623_370--Hb_000714_020 Hb_001623_370--Hb_004502_030 Hb_011609_030 Hb_011609_030 Hb_001623_370--Hb_011609_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
368.367 66.8926 60.9087 27.6274 288.767 275.823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
260.341 248.603 110.962 61.1359 16.9163

CAGE analysis