Hb_001514_050

Information

Type -
Description -
Location Contig1514: 41978-43068
Sequence    

Annotation

kegg
ID rcu:RCOM_1589130
description hypothetical protein
nr
ID XP_012068286.1
description PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
swissprot
ID Q8L9J9
description Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2
trembl
ID A0A067KZS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12825: 42568-43062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_050 0.0 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
2 Hb_005000_150 0.0688986915 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002151_070 0.0822003171 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
4 Hb_001140_290 0.0873575468 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
5 Hb_001712_030 0.0913459756 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
6 Hb_003090_190 0.0919372111 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
7 Hb_001289_070 0.0919916626 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_007227_030 0.1004549986 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
9 Hb_002835_360 0.1011002454 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
10 Hb_138977_010 0.1011844158 - - unnamed protein product [Vitis vinifera]
11 Hb_000165_260 0.1026303193 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
12 Hb_015807_130 0.1026997924 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
13 Hb_000813_070 0.1033414832 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003152_020 0.1037941728 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
15 Hb_004787_120 0.1050267051 - - PREDICTED: transcription factor TCP14 [Jatropha curcas]
16 Hb_001397_020 0.1052571553 - - cytochrome P450 family protein [Populus trichocarpa]
17 Hb_008001_030 0.1059520318 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_005711_030 0.1110995233 - - hypothetical protein RCOM_0460020 [Ricinus communis]
19 Hb_010589_010 0.1120035392 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
20 Hb_008518_060 0.1133765659 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001514_050 Hb_001514_050 Hb_005000_150 Hb_005000_150 Hb_001514_050--Hb_005000_150 Hb_002151_070 Hb_002151_070 Hb_001514_050--Hb_002151_070 Hb_001140_290 Hb_001140_290 Hb_001514_050--Hb_001140_290 Hb_001712_030 Hb_001712_030 Hb_001514_050--Hb_001712_030 Hb_003090_190 Hb_003090_190 Hb_001514_050--Hb_003090_190 Hb_001289_070 Hb_001289_070 Hb_001514_050--Hb_001289_070 Hb_005000_150--Hb_001140_290 Hb_005000_150--Hb_002151_070 Hb_003152_020 Hb_003152_020 Hb_005000_150--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_005000_150--Hb_001397_020 Hb_005000_150--Hb_001289_070 Hb_002151_070--Hb_001140_290 Hb_000103_440 Hb_000103_440 Hb_002151_070--Hb_000103_440 Hb_000813_070 Hb_000813_070 Hb_002151_070--Hb_000813_070 Hb_005711_030 Hb_005711_030 Hb_002151_070--Hb_005711_030 Hb_002151_070--Hb_001289_070 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_002809_180 Hb_002809_180 Hb_001140_290--Hb_002809_180 Hb_001140_290--Hb_000103_440 Hb_010589_010 Hb_010589_010 Hb_001140_290--Hb_010589_010 Hb_000462_040 Hb_000462_040 Hb_001712_030--Hb_000462_040 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_001712_030--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_001712_030--Hb_007281_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_000165_260 Hb_000165_260 Hb_001712_030--Hb_000165_260 Hb_003090_190--Hb_000165_260 Hb_000328_030 Hb_000328_030 Hb_003090_190--Hb_000328_030 Hb_000245_110 Hb_000245_110 Hb_003090_190--Hb_000245_110 Hb_003090_190--Hb_000311_100 Hb_000012_380 Hb_000012_380 Hb_003090_190--Hb_000012_380 Hb_015807_090 Hb_015807_090 Hb_003090_190--Hb_015807_090 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_001289_070--Hb_003152_020 Hb_001289_070--Hb_000813_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0750415 0.933492 1.4431 8.3945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0573956 0 0 0.145589 8.15583

CAGE analysis