Hb_001514_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig1514: 56017-56976
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12410g
description POPTRDRAFT_644073; hypothetical protein
nr
ID KDP41681.1
description hypothetical protein JCGZ_16088 [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067KZQ6
description MYB family protein OS=Jatropha curcas GN=JCGZ_16088 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12826: 55658-57438
cDNA
(Sanger)
(ID:Location)		 026_C15.ab1: 55876-56374 , 036_C17.ab1: 55884-56535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_060 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
2 Hb_162074_010 0.1480231859 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_009897_020 0.1533080541 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_000488_020 0.1657629653 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
5 Hb_004648_070 0.1676254318 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000732_080 0.1714805182 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
7 Hb_002760_040 0.1719871713 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
8 Hb_151671_010 0.1731522542 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
9 Hb_004800_190 0.1754890662 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
10 Hb_012725_040 0.1806750216 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_002686_400 0.1812477799 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
12 Hb_021576_140 0.1864613117 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
13 Hb_003494_060 0.1867942571 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
14 Hb_000540_010 0.1875688488 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
15 Hb_001865_060 0.1889713724 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_185513_010 0.1899596281 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011885_010 0.1907366386 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_089100_040 0.1912361578 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
19 Hb_002774_150 0.191864312 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
20 Hb_033642_070 0.1941753454 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_001514_060 Hb_001514_060 Hb_162074_010 Hb_162074_010 Hb_001514_060--Hb_162074_010 Hb_009897_020 Hb_009897_020 Hb_001514_060--Hb_009897_020 Hb_000488_020 Hb_000488_020 Hb_001514_060--Hb_000488_020 Hb_004648_070 Hb_004648_070 Hb_001514_060--Hb_004648_070 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_002760_040 Hb_002760_040 Hb_001514_060--Hb_002760_040 Hb_162074_010--Hb_009897_020 Hb_012725_040 Hb_012725_040 Hb_162074_010--Hb_012725_040 Hb_185513_010 Hb_185513_010 Hb_162074_010--Hb_185513_010 Hb_056012_010 Hb_056012_010 Hb_162074_010--Hb_056012_010 Hb_004800_190 Hb_004800_190 Hb_162074_010--Hb_004800_190 Hb_001865_060 Hb_001865_060 Hb_162074_010--Hb_001865_060 Hb_009897_020--Hb_004800_190 Hb_009897_020--Hb_002760_040 Hb_009897_020--Hb_001865_060 Hb_002686_400 Hb_002686_400 Hb_009897_020--Hb_002686_400 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_011885_010 Hb_011885_010 Hb_000488_020--Hb_011885_010 Hb_000488_020--Hb_004800_190 Hb_143863_010 Hb_143863_010 Hb_000488_020--Hb_143863_010 Hb_000488_020--Hb_009897_020 Hb_000540_010 Hb_000540_010 Hb_000488_020--Hb_000540_010 Hb_006745_010 Hb_006745_010 Hb_004648_070--Hb_006745_010 Hb_012038_010 Hb_012038_010 Hb_004648_070--Hb_012038_010 Hb_002387_070 Hb_002387_070 Hb_004648_070--Hb_002387_070 Hb_000139_180 Hb_000139_180 Hb_004648_070--Hb_000139_180 Hb_000015_160 Hb_000015_160 Hb_004648_070--Hb_000015_160 Hb_103788_010 Hb_103788_010 Hb_000732_080--Hb_103788_010 Hb_089100_040 Hb_089100_040 Hb_000732_080--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000732_080--Hb_004162_120 Hb_006054_030 Hb_006054_030 Hb_000732_080--Hb_006054_030 Hb_080451_010 Hb_080451_010 Hb_000732_080--Hb_080451_010 Hb_005096_010 Hb_005096_010 Hb_000732_080--Hb_005096_010 Hb_005656_140 Hb_005656_140 Hb_002760_040--Hb_005656_140 Hb_003494_060 Hb_003494_060 Hb_002760_040--Hb_003494_060 Hb_002760_040--Hb_002686_400 Hb_117895_010 Hb_117895_010 Hb_002760_040--Hb_117895_010 Hb_003155_020 Hb_003155_020 Hb_002760_040--Hb_003155_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7008 308.854 23.3774 70.0601 98.7403 29.673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.91995 5.15919 9.54691 33.4156 28.317

CAGE analysis