Hb_001514_110

Information

Type -
Description -
Location Contig1514: 122303-122593
Sequence    

Annotation

kegg
ID rcu:RCOM_1588600
description hypothetical protein
nr
ID XP_002510143.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R750
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1588600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12832: 122245-122509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012691_040 0.0227404864 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
3 Hb_004117_360 0.0284752606 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
4 Hb_005725_180 0.0396822071 - - -
5 Hb_073423_010 0.043289595 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_142691_010 0.0449784517 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
7 Hb_002486_030 0.0484868192 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
8 Hb_008579_010 0.0491272352 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
9 Hb_111908_010 0.0552650207 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005843_070 0.0613656325 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
11 Hb_143232_020 0.0728984291 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
12 Hb_001565_050 0.0740964004 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
13 Hb_015978_040 0.0845110107 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
14 Hb_011111_010 0.0852664839 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
15 Hb_147137_020 0.0861393235 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
16 Hb_004157_080 0.0861947252 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
17 Hb_005946_190 0.0863853303 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
18 Hb_104855_020 0.0934035244 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_022768_010 0.0987850563 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
20 Hb_110048_010 0.101175789 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001514_110 Hb_001514_110 Hb_012691_040 Hb_012691_040 Hb_001514_110--Hb_012691_040 Hb_004117_360 Hb_004117_360 Hb_001514_110--Hb_004117_360 Hb_005725_180 Hb_005725_180 Hb_001514_110--Hb_005725_180 Hb_073423_010 Hb_073423_010 Hb_001514_110--Hb_073423_010 Hb_142691_010 Hb_142691_010 Hb_001514_110--Hb_142691_010 Hb_002486_030 Hb_002486_030 Hb_001514_110--Hb_002486_030 Hb_012691_040--Hb_142691_010 Hb_008579_010 Hb_008579_010 Hb_012691_040--Hb_008579_010 Hb_012691_040--Hb_073423_010 Hb_012691_040--Hb_002486_030 Hb_012691_040--Hb_004117_360 Hb_004117_360--Hb_073423_010 Hb_004117_360--Hb_002486_030 Hb_004117_360--Hb_008579_010 Hb_004117_360--Hb_142691_010 Hb_005843_070 Hb_005843_070 Hb_005725_180--Hb_005843_070 Hb_005725_180--Hb_012691_040 Hb_005725_180--Hb_004117_360 Hb_015978_040 Hb_015978_040 Hb_005725_180--Hb_015978_040 Hb_111908_010 Hb_111908_010 Hb_005725_180--Hb_111908_010 Hb_073423_010--Hb_002486_030 Hb_073423_010--Hb_008579_010 Hb_073423_010--Hb_142691_010 Hb_143232_020 Hb_143232_020 Hb_073423_010--Hb_143232_020 Hb_142691_010--Hb_008579_010 Hb_142691_010--Hb_002486_030 Hb_104855_020 Hb_104855_020 Hb_142691_010--Hb_104855_020 Hb_002486_030--Hb_008579_010 Hb_002486_030--Hb_143232_020 Hb_002486_030--Hb_104855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.1967 1.18648 0.536229 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis