Hb_001514_180

Information

Type transcription factor
Description TF Family: M-type
Location Contig1514: 174910-178103
Sequence    

Annotation

kegg
ID vvi:100253913
description MADS-box transcription factor 3
nr
ID KDP41660.1
description hypothetical protein JCGZ_16067 [Jatropha curcas]
swissprot
ID P29381
description Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1
trembl
ID A0A067LAY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16067 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like 104

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12840: 174867-178124
cDNA
(Sanger)
(ID:Location)		 010_F15.ab1: 175066-177318 , 018_N20.ab1: 176326-177938 , 032_N15.ab1: 176342-177938 , 049_B24.ab1: 176356-177937 , 053_G18.ab1: 176057-177939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_180 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
2 Hb_024505_040 0.0762471195 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
3 Hb_000041_070 0.0805894049 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
4 Hb_001741_080 0.0901689118 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
5 Hb_111648_010 0.0921270912 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
6 Hb_060668_010 0.0921609309 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
7 Hb_000444_030 0.094060761 - - PREDICTED: expansin-A20 [Jatropha curcas]
8 Hb_005016_130 0.1106445616 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
9 Hb_004206_030 0.1181516244 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_002387_060 0.1221118206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000849_040 0.1273849646 - - transcription factor, putative [Ricinus communis]
12 Hb_003106_140 0.1280543002 - - conserved hypothetical protein [Ricinus communis]
13 Hb_115919_020 0.1281437379 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
14 Hb_002235_230 0.1283053889 - - latex abundant protein 1 [Hevea brasiliensis]
15 Hb_006816_440 0.1290341812 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_000787_070 0.1326074863 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
17 Hb_000032_220 0.1335354055 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
18 Hb_015934_020 0.135395334 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
19 Hb_000078_010 0.1381910588 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
20 Hb_000184_180 0.1384589615 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001514_180 Hb_001514_180 Hb_024505_040 Hb_024505_040 Hb_001514_180--Hb_024505_040 Hb_000041_070 Hb_000041_070 Hb_001514_180--Hb_000041_070 Hb_001741_080 Hb_001741_080 Hb_001514_180--Hb_001741_080 Hb_111648_010 Hb_111648_010 Hb_001514_180--Hb_111648_010 Hb_060668_010 Hb_060668_010 Hb_001514_180--Hb_060668_010 Hb_000444_030 Hb_000444_030 Hb_001514_180--Hb_000444_030 Hb_000849_040 Hb_000849_040 Hb_024505_040--Hb_000849_040 Hb_000787_070 Hb_000787_070 Hb_024505_040--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_024505_040--Hb_005016_130 Hb_024505_040--Hb_000041_070 Hb_000442_030 Hb_000442_030 Hb_024505_040--Hb_000442_030 Hb_000041_070--Hb_001741_080 Hb_004206_030 Hb_004206_030 Hb_000041_070--Hb_004206_030 Hb_000041_070--Hb_060668_010 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_001741_080--Hb_060668_010 Hb_001741_080--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_001741_080--Hb_000444_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_111648_010--Hb_000041_070 Hb_000078_010 Hb_000078_010 Hb_111648_010--Hb_000078_010 Hb_111648_010--Hb_024505_040 Hb_111648_010--Hb_000444_030 Hb_060668_010--Hb_004206_030 Hb_060668_010--Hb_005016_130 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020 Hb_000184_180 Hb_000184_180 Hb_000444_030--Hb_000184_180 Hb_006816_440 Hb_006816_440 Hb_000444_030--Hb_006816_440 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
225.991 4.49448 1.38848 10.4724 190.173 338.612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
649.388 362.996 436.379 45.2882 1.02588

CAGE analysis