Hb_001514_200

Information

Type -
Description -
Location Contig1514: 188364-191351
Sequence    

Annotation

kegg
ID mdm:103417981
description F-box/LRR-repeat protein 25-like
nr
ID XP_012075644.1
description PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
swissprot
ID Q9FJC1
description Putative FBD-associated F-box protein At5g53635 OS=Arabidopsis thaliana GN=At5g53635 PE=3 SV=1
trembl
ID A0A067LNB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11867 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_200 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
2 Hb_000847_070 0.0833098321 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
3 Hb_004096_170 0.0896153358 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
4 Hb_000284_200 0.0937232526 - - -
5 Hb_002377_050 0.0955485011 - - Agmatine deiminase, putative [Ricinus communis]
6 Hb_003605_070 0.1014873104 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
7 Hb_002681_140 0.1062435073 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
8 Hb_002044_090 0.106515852 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
9 Hb_000172_400 0.1068080957 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_002149_040 0.1072803066 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005288_160 0.1073569953 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
12 Hb_001776_080 0.1094298397 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
13 Hb_000176_140 0.1095502551 - - PREDICTED: bystin [Jatropha curcas]
14 Hb_002249_140 0.1100968159 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
15 Hb_002169_010 0.1111437938 - - PREDICTED: la-related protein 6B [Jatropha curcas]
16 Hb_000371_110 0.1113186553 - - -
17 Hb_000481_010 0.1118460764 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
18 Hb_001016_060 0.1121590739 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001433_170 0.1144094772 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
20 Hb_000035_380 0.1144107499 - - -

Gene co-expression network

sample Hb_001514_200 Hb_001514_200 Hb_000847_070 Hb_000847_070 Hb_001514_200--Hb_000847_070 Hb_004096_170 Hb_004096_170 Hb_001514_200--Hb_004096_170 Hb_000284_200 Hb_000284_200 Hb_001514_200--Hb_000284_200 Hb_002377_050 Hb_002377_050 Hb_001514_200--Hb_002377_050 Hb_003605_070 Hb_003605_070 Hb_001514_200--Hb_003605_070 Hb_002681_140 Hb_002681_140 Hb_001514_200--Hb_002681_140 Hb_000847_070--Hb_004096_170 Hb_001514_020 Hb_001514_020 Hb_000847_070--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_000284_200--Hb_002681_140 Hb_000015_010 Hb_000015_010 Hb_000284_200--Hb_000015_010 Hb_000284_200--Hb_000847_070 Hb_000284_200--Hb_004502_030 Hb_000284_200--Hb_006637_060 Hb_002169_010 Hb_002169_010 Hb_002377_050--Hb_002169_010 Hb_000176_140 Hb_000176_140 Hb_002377_050--Hb_000176_140 Hb_001776_080 Hb_001776_080 Hb_002377_050--Hb_001776_080 Hb_000491_080 Hb_000491_080 Hb_002377_050--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_002377_050--Hb_001433_170 Hb_127979_010 Hb_127979_010 Hb_002377_050--Hb_127979_010 Hb_005288_160 Hb_005288_160 Hb_003605_070--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_003605_070--Hb_000209_090 Hb_001623_580 Hb_001623_580 Hb_003605_070--Hb_001623_580 Hb_001016_060 Hb_001016_060 Hb_003605_070--Hb_001016_060 Hb_002276_190 Hb_002276_190 Hb_003605_070--Hb_002276_190 Hb_003605_070--Hb_000847_070 Hb_002391_110 Hb_002391_110 Hb_002681_140--Hb_002391_110 Hb_002681_140--Hb_000176_140 Hb_002681_140--Hb_002044_090 Hb_002681_140--Hb_127979_010 Hb_011496_010 Hb_011496_010 Hb_002681_140--Hb_011496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59718 2.00217 0.372728 0.45597 7.67242 6.12049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99441 4.34089 2.68321 1.58681 0.426928

CAGE analysis