Hb_001516_100

Information

Type transcription factor
Description TF Family: C3H
Location Contig1516: 143941-147556
Sequence    

Annotation

kegg
ID rcu:RCOM_0089240
description nucleic acid binding protein, putative
nr
ID XP_002526718.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID P93755
description Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
trembl
ID B9SL49
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0089240 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001516_100 0.0 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004734_060 0.0702143922 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
3 Hb_000953_010 0.0795456673 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
4 Hb_000836_360 0.0798253256 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
5 Hb_000808_180 0.0828951924 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
6 Hb_000977_070 0.0866776437 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
7 Hb_033152_080 0.0879070709 - - RNA-binding protein Nova-1, putative [Ricinus communis]
8 Hb_002026_100 0.0895019832 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
9 Hb_001728_100 0.0897028989 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
10 Hb_004225_020 0.0902089992 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000184_130 0.0912919314 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
12 Hb_005324_010 0.0932768827 - - Chaperone protein dnaJ, putative [Ricinus communis]
13 Hb_000661_050 0.0935153246 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_001274_020 0.0937941455 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
15 Hb_000229_020 0.0944600551 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
16 Hb_001663_030 0.0947154802 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
17 Hb_001141_330 0.0963606305 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
18 Hb_005307_030 0.0966115275 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
19 Hb_000209_020 0.0973389864 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
20 Hb_004837_040 0.0979395005 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_001516_100 Hb_001516_100 Hb_004734_060 Hb_004734_060 Hb_001516_100--Hb_004734_060 Hb_000953_010 Hb_000953_010 Hb_001516_100--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_001516_100--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_033152_080 Hb_033152_080 Hb_001516_100--Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_000953_010--Hb_000803_190 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_000836_360--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000836_360--Hb_005324_010 Hb_000808_180--Hb_033152_080 Hb_001366_040 Hb_001366_040 Hb_000808_180--Hb_001366_040 Hb_002798_040 Hb_002798_040 Hb_000808_180--Hb_002798_040 Hb_000808_180--Hb_004734_060 Hb_002960_060 Hb_002960_060 Hb_000808_180--Hb_002960_060 Hb_001736_040 Hb_001736_040 Hb_000977_070--Hb_001736_040 Hb_001141_330 Hb_001141_330 Hb_000977_070--Hb_001141_330 Hb_001488_330 Hb_001488_330 Hb_000977_070--Hb_001488_330 Hb_000827_070 Hb_000827_070 Hb_000977_070--Hb_000827_070 Hb_000152_820 Hb_000152_820 Hb_000977_070--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_000977_070--Hb_000317_020 Hb_033152_080--Hb_000803_190 Hb_033152_080--Hb_000184_130 Hb_033152_080--Hb_000209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6811 28.2099 3.52287 8.4732 25.1315 35.1755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.189 19.3733 26.6908 15.0879 9.7102

CAGE analysis