Hb_001517_050

Information

Type transcription factor
Description TF Family: BBR-BPC
Location Contig1517: 26201-27060
Sequence    

Annotation

kegg
ID rcu:RCOM_1316970
description hypothetical protein
nr
ID XP_002519003.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O82286
description Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1
trembl
ID B9RZ34
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1316970 PE=4 SV=1
Gene Ontology
ID GO:0003700
description protein basic pentacysteine7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12875: 24945-27402
cDNA
(Sanger)
(ID:Location)		 023_A19.ab1: 24945-26905

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_050 0.0 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
2 Hb_000300_260 0.0776956987 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
3 Hb_002284_150 0.0794311466 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
4 Hb_000789_320 0.086473667 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_006816_100 0.0872238231 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
6 Hb_012340_090 0.0886548397 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
7 Hb_003213_010 0.0924079297 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
8 Hb_011671_310 0.0942834589 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
9 Hb_000173_310 0.0946842958 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
10 Hb_029351_010 0.0948001625 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_001723_150 0.0963196256 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
12 Hb_002343_040 0.0989324882 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002304_150 0.0994442145 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_146255_020 0.0996548222 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
15 Hb_002284_210 0.0996721027 - - PREDICTED: protein canopy-1 [Jatropha curcas]
16 Hb_004312_010 0.1015388174 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
17 Hb_002874_180 0.1021234879 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
18 Hb_002946_190 0.1022066768 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
19 Hb_000028_520 0.1024073455 - - hypothetical protein L484_025125 [Morus notabilis]
20 Hb_001277_280 0.1035233367 - - PREDICTED: protein argonaute 10 [Jatropha curcas]

Gene co-expression network

sample Hb_001517_050 Hb_001517_050 Hb_000300_260 Hb_000300_260 Hb_001517_050--Hb_000300_260 Hb_002284_150 Hb_002284_150 Hb_001517_050--Hb_002284_150 Hb_000789_320 Hb_000789_320 Hb_001517_050--Hb_000789_320 Hb_006816_100 Hb_006816_100 Hb_001517_050--Hb_006816_100 Hb_012340_090 Hb_012340_090 Hb_001517_050--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_001517_050--Hb_003213_010 Hb_004312_010 Hb_004312_010 Hb_000300_260--Hb_004312_010 Hb_000173_310 Hb_000173_310 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_002284_150--Hb_012340_090 Hb_002284_150--Hb_003213_010 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_171900_090 Hb_171900_090 Hb_000789_320--Hb_171900_090 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000789_320--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210 Hb_001277_280 Hb_001277_280 Hb_006816_100--Hb_001277_280 Hb_002284_210 Hb_002284_210 Hb_006816_100--Hb_002284_210 Hb_003760_030 Hb_003760_030 Hb_006816_100--Hb_003760_030 Hb_002485_030 Hb_002485_030 Hb_006816_100--Hb_002485_030 Hb_065755_030 Hb_065755_030 Hb_006816_100--Hb_065755_030 Hb_001105_170 Hb_001105_170 Hb_012340_090--Hb_001105_170 Hb_002343_040 Hb_002343_040 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_012340_090--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_012340_090--Hb_003848_040 Hb_003213_010--Hb_000173_310 Hb_003213_010--Hb_001723_150 Hb_003213_010--Hb_000649_230 Hb_003213_010--Hb_004312_010 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7038 9.90736 34.8656 16.3401 8.94946 13.8756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3836 14.9395 10.5854 9.1375 11.021

CAGE analysis