Hb_001518_020

Information

Type -
Description -
Location Contig1518: 13483-21446
Sequence    

Annotation

kegg
ID fve:101296392
description putative F-box/FBD/LRR-repeat protein At4g03220-like
nr
ID XP_004301725.1
description PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
swissprot
ID Q9FZ52
description F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1
trembl
ID B9S0K5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12905: 14285-15480 , PASA_asmbl_12906: 14897-15071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_020 0.0 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
2 Hb_000856_340 0.0899307809 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
3 Hb_000809_040 0.0930813832 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
4 Hb_000163_290 0.095524873 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
5 Hb_000300_620 0.0963868565 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
6 Hb_031089_010 0.0996925568 - - DNA binding protein, putative [Ricinus communis]
7 Hb_009382_020 0.1030267276 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
8 Hb_003428_110 0.1040403746 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
9 Hb_002849_210 0.1091073334 - - protein binding protein, putative [Ricinus communis]
10 Hb_006816_360 0.1100077945 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
11 Hb_003747_240 0.1103866324 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
12 Hb_000771_140 0.113925718 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
13 Hb_003638_030 0.1145122087 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_134226_010 0.1150050929 - - 40S ribosomal protein S21e, putative [Ricinus communis]
15 Hb_000313_380 0.1155719052 - - conserved hypothetical protein [Ricinus communis]
16 Hb_026048_090 0.1179321571 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002357_040 0.1181410744 - - latex-abundant protein [Hevea brasiliensis]
18 Hb_001981_090 0.1189901531 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
19 Hb_000805_090 0.1198500855 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
20 Hb_127979_010 0.1209203843 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]

Gene co-expression network

sample Hb_001518_020 Hb_001518_020 Hb_000856_340 Hb_000856_340 Hb_001518_020--Hb_000856_340 Hb_000809_040 Hb_000809_040 Hb_001518_020--Hb_000809_040 Hb_000163_290 Hb_000163_290 Hb_001518_020--Hb_000163_290 Hb_000300_620 Hb_000300_620 Hb_001518_020--Hb_000300_620 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_009382_020 Hb_009382_020 Hb_001518_020--Hb_009382_020 Hb_000975_290 Hb_000975_290 Hb_000856_340--Hb_000975_290 Hb_007152_020 Hb_007152_020 Hb_000856_340--Hb_007152_020 Hb_000173_170 Hb_000173_170 Hb_000856_340--Hb_000173_170 Hb_000313_380 Hb_000313_380 Hb_000856_340--Hb_000313_380 Hb_027472_180 Hb_027472_180 Hb_000856_340--Hb_027472_180 Hb_001366_220 Hb_001366_220 Hb_000809_040--Hb_001366_220 Hb_000809_040--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_006499_010 Hb_006499_010 Hb_000163_290--Hb_006499_010 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_003747_240 Hb_003747_240 Hb_000163_290--Hb_003747_240 Hb_000371_110 Hb_000371_110 Hb_000163_290--Hb_000371_110 Hb_001186_060 Hb_001186_060 Hb_000163_290--Hb_001186_060 Hb_000300_620--Hb_009382_020 Hb_000300_620--Hb_001981_090 Hb_000300_620--Hb_000809_040 Hb_004223_130 Hb_004223_130 Hb_000300_620--Hb_004223_130 Hb_010710_030 Hb_010710_030 Hb_000300_620--Hb_010710_030 Hb_133271_020 Hb_133271_020 Hb_031089_010--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_031089_010--Hb_001030_120 Hb_000017_120 Hb_000017_120 Hb_031089_010--Hb_000017_120 Hb_134226_010 Hb_134226_010 Hb_031089_010--Hb_134226_010 Hb_158092_070 Hb_158092_070 Hb_031089_010--Hb_158092_070 Hb_159558_030 Hb_159558_030 Hb_031089_010--Hb_159558_030 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.79329 1.14628 0.168602 0.672477 4.50746 5.19124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47609 4.28796 4.92213 2.10702 0.0815199

CAGE analysis