Hb_001518_030

Information

Type -
Description -
Location Contig1518: 23358-28909
Sequence    

Annotation

kegg
ID rcu:RCOM_0413570
description Receptor protein kinase CLAVATA1 precursor, putative
nr
ID XP_002532341.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9FG24
description Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1
trembl
ID B9T272
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0413570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein strubbelig-receptor family 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12907: 23447-25314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_030 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_026048_030 0.050585486 - - conserved hypothetical protein [Ricinus communis]
3 Hb_024650_010 0.0718810518 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
4 Hb_000028_330 0.0775728719 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
5 Hb_003435_040 0.0902721235 - - tonoplast intrinsic protein [Hevea brasiliensis]
6 Hb_001310_080 0.0920381457 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
7 Hb_006736_040 0.0956770364 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
8 Hb_000329_170 0.1044577443 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
9 Hb_113396_010 0.106829235 - - cytochrome P450, putative [Ricinus communis]
10 Hb_004109_110 0.1101662875 - - dioxygenase family protein [Populus trichocarpa]
11 Hb_001610_070 0.1112549942 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
12 Hb_029622_090 0.1114621133 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
13 Hb_002725_080 0.1116873977 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_008352_020 0.113749487 - - hypothetical protein [Cecembia lonarensis]
15 Hb_005618_010 0.1167065275 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
16 Hb_000365_190 0.1174139951 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
17 Hb_005946_200 0.1200536019 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
18 Hb_002218_080 0.1234947871 - - Ankyrin repeat family protein, putative [Theobroma cacao]
19 Hb_006002_020 0.1237333673 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
20 Hb_000047_010 0.1240869512 - - PREDICTED: expansin-like A1 [Jatropha curcas]

Gene co-expression network

sample Hb_001518_030 Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_001518_030--Hb_026048_030 Hb_024650_010 Hb_024650_010 Hb_001518_030--Hb_024650_010 Hb_000028_330 Hb_000028_330 Hb_001518_030--Hb_000028_330 Hb_003435_040 Hb_003435_040 Hb_001518_030--Hb_003435_040 Hb_001310_080 Hb_001310_080 Hb_001518_030--Hb_001310_080 Hb_006736_040 Hb_006736_040 Hb_001518_030--Hb_006736_040 Hb_026048_030--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_026048_030--Hb_113396_010 Hb_026048_030--Hb_000028_330 Hb_026048_030--Hb_024650_010 Hb_000365_190 Hb_000365_190 Hb_026048_030--Hb_000365_190 Hb_024650_010--Hb_006736_040 Hb_024650_010--Hb_003435_040 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080 Hb_001198_160 Hb_001198_160 Hb_000028_330--Hb_001198_160 Hb_001610_070 Hb_001610_070 Hb_000028_330--Hb_001610_070 Hb_000028_330--Hb_006736_040 Hb_029622_090 Hb_029622_090 Hb_000028_330--Hb_029622_090 Hb_003435_040--Hb_006736_040 Hb_001013_080 Hb_001013_080 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_003849_200 Hb_003849_200 Hb_003435_040--Hb_003849_200 Hb_001310_080--Hb_113396_010 Hb_002218_080 Hb_002218_080 Hb_001310_080--Hb_002218_080 Hb_004112_050 Hb_004112_050 Hb_001310_080--Hb_004112_050 Hb_000024_020 Hb_000024_020 Hb_001310_080--Hb_000024_020 Hb_006736_040--Hb_001610_070 Hb_006736_040--Hb_001013_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.09359 0.562379 1.09743 0 0.00896865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.080224 0.270883

CAGE analysis