Hb_001518_040

Information

Type -
Description -
Location Contig1518: 32761-36222
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04900g
description POPTRDRAFT_667389; hypothetical protein
nr
ID XP_011033247.1
description PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9II12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s04900g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12908: 32968-33895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_040 0.0 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
2 Hb_029510_140 0.072105899 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
3 Hb_000384_090 0.0892602647 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
4 Hb_000617_020 0.0898991122 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
5 Hb_060809_010 0.0917247493 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
6 Hb_003005_020 0.0928030661 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
7 Hb_003097_150 0.0934621938 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
8 Hb_002149_020 0.0954918093 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
9 Hb_000317_430 0.0959687783 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
10 Hb_001221_230 0.0978295863 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001771_090 0.0987261005 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
12 Hb_000175_070 0.0993847696 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
13 Hb_000322_050 0.1001272967 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
14 Hb_004440_090 0.1021273045 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
15 Hb_002609_110 0.1031384874 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
16 Hb_001157_060 0.1046653869 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
17 Hb_028900_020 0.1051998032 - - unnamed protein product [Coffea canephora]
18 Hb_114343_010 0.1074593549 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
19 Hb_001135_160 0.1078082022 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
20 Hb_003120_060 0.1079340116 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001518_040 Hb_001518_040 Hb_029510_140 Hb_029510_140 Hb_001518_040--Hb_029510_140 Hb_000384_090 Hb_000384_090 Hb_001518_040--Hb_000384_090 Hb_000617_020 Hb_000617_020 Hb_001518_040--Hb_000617_020 Hb_060809_010 Hb_060809_010 Hb_001518_040--Hb_060809_010 Hb_003005_020 Hb_003005_020 Hb_001518_040--Hb_003005_020 Hb_003097_150 Hb_003097_150 Hb_001518_040--Hb_003097_150 Hb_000175_070 Hb_000175_070 Hb_029510_140--Hb_000175_070 Hb_007193_100 Hb_007193_100 Hb_029510_140--Hb_007193_100 Hb_063134_010 Hb_063134_010 Hb_029510_140--Hb_063134_010 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_000608_030 Hb_000608_030 Hb_000384_090--Hb_000608_030 Hb_000384_090--Hb_003005_020 Hb_003120_060 Hb_003120_060 Hb_000384_090--Hb_003120_060 Hb_000384_090--Hb_063134_010 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_003195_060 Hb_003195_060 Hb_000384_090--Hb_003195_060 Hb_000174_090 Hb_000174_090 Hb_000617_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_000617_020--Hb_007426_230 Hb_002835_410 Hb_002835_410 Hb_000617_020--Hb_002835_410 Hb_001771_090 Hb_001771_090 Hb_000617_020--Hb_001771_090 Hb_000617_020--Hb_002609_110 Hb_000617_020--Hb_000175_070 Hb_000317_430 Hb_000317_430 Hb_060809_010--Hb_000317_430 Hb_000035_380 Hb_000035_380 Hb_060809_010--Hb_000035_380 Hb_003125_040 Hb_003125_040 Hb_060809_010--Hb_003125_040 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_060809_010--Hb_000175_070 Hb_060809_010--Hb_003005_020 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_004600_040 Hb_004600_040 Hb_003097_150--Hb_004600_040 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17545 0.286499 0.263629 0.564053 2.02697 2.21531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26293 1.76533 0.895658 0.849395 0.552053

CAGE analysis