Hb_001518_070

Information

Type -
Description -
Location Contig1518: 88352-88681
Sequence    

Annotation

kegg
ID rcu:RCOM_0413800
description hypothetical protein
nr
ID XP_002532344.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T275
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0413800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12911: 88761-89387 , PASA_asmbl_12912: 88478-93532
cDNA
(Sanger)
(ID:Location)		 011_F20.ab1: 88478-93532 , 041_L07.ab1: 88491-93532 , 053_P01.ab1: 88483-93531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002192_090 0.1128786457 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
3 Hb_133724_010 0.137034496 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000053_030 0.1505330096 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
5 Hb_010964_020 0.1534119198 - - RNA helicase [Arabidopsis thaliana]
6 Hb_002388_010 0.1561900633 - - -
7 Hb_000111_030 0.1603642381 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
8 Hb_011942_010 0.16202615 - - conserved hypothetical protein [Ricinus communis]
9 Hb_075764_010 0.1620804415 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
10 Hb_089202_010 0.1635499938 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
11 Hb_182713_020 0.1666609416 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
12 Hb_011287_040 0.1710809936 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
13 Hb_001747_030 0.1728171167 - - hypothetical protein F383_08210 [Gossypium arboreum]
14 Hb_004466_060 0.1743447545 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
15 Hb_178620_010 0.1751546019 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
16 Hb_002027_180 0.1793712704 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
17 Hb_035436_010 0.1805561824 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
18 Hb_013749_010 0.1811473597 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013394_100 0.1826363154 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
20 Hb_130613_010 0.1850127673 - - Charged multivesicular body protein 2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_001518_070 Hb_001518_070 Hb_002192_090 Hb_002192_090 Hb_001518_070--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_001518_070--Hb_133724_010 Hb_000053_030 Hb_000053_030 Hb_001518_070--Hb_000053_030 Hb_010964_020 Hb_010964_020 Hb_001518_070--Hb_010964_020 Hb_002388_010 Hb_002388_010 Hb_001518_070--Hb_002388_010 Hb_000111_030 Hb_000111_030 Hb_001518_070--Hb_000111_030 Hb_002192_090--Hb_133724_010 Hb_002192_090--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050 Hb_133724_010--Hb_002388_010 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_000053_030--Hb_099878_050 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020 Hb_002388_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_000111_030--Hb_130613_010 Hb_000111_030--Hb_001747_030 Hb_182713_020 Hb_182713_020 Hb_000111_030--Hb_182713_020 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_000111_030--Hb_002192_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0149 29.5657 50.5992 206.694 25.7198 119.565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0831 51.0575 20.9268 13.3663 25.1127

CAGE analysis