Hb_001518_080

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1518: 96284-98023
Sequence    

Annotation

kegg
ID rcu:RCOM_0278040
description hypothetical protein
nr
ID XP_012087801.1
description PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25523 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_080 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
2 Hb_000635_090 0.0564343024 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
3 Hb_000214_050 0.0587601685 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
4 Hb_079526_040 0.0587899592 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
5 Hb_002027_080 0.059077813 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
6 Hb_002811_270 0.0593555899 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
7 Hb_015807_050 0.0631834115 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
8 Hb_002326_040 0.0647980236 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
9 Hb_000163_090 0.0653135498 - - gamma-tubulin complex component, putative [Ricinus communis]
10 Hb_003581_200 0.0655260886 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
11 Hb_006501_090 0.0662131423 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
12 Hb_008511_020 0.0666486925 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
13 Hb_000441_220 0.0675464312 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_012506_030 0.0679864145 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_000345_160 0.0701740846 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_001348_080 0.0703410251 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
17 Hb_001655_030 0.0712308044 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
18 Hb_000373_080 0.0717243397 - - PREDICTED: serine decarboxylase [Jatropha curcas]
19 Hb_028960_020 0.0718963863 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
20 Hb_001377_310 0.0739533826 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]

Gene co-expression network

sample Hb_001518_080 Hb_001518_080 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_000635_090--Hb_002027_080 Hb_000103_340 Hb_000103_340 Hb_000635_090--Hb_000103_340 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000270_190 Hb_000270_190 Hb_000635_090--Hb_000270_190 Hb_000773_040 Hb_000773_040 Hb_000635_090--Hb_000773_040 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_000214_050--Hb_002811_270 Hb_003186_020 Hb_003186_020 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_000078_140 Hb_000078_140 Hb_079526_040--Hb_000078_140 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_159809_070 Hb_159809_070 Hb_079526_040--Hb_159809_070 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_002027_080--Hb_000773_040 Hb_002811_270--Hb_002326_040 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_002811_270--Hb_000373_080 Hb_002811_270--Hb_003186_020 Hb_000313_220 Hb_000313_220 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_109980_010 Hb_109980_010 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13134 1.74512 3.0614 3.00211 1.84607 2.48523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4768 1.39015 2.07683 2.38907 2.92482

CAGE analysis