Hb_001519_030

Information

Type -
Description -
Location Contig1519: 20970-24604
Sequence    

Annotation

kegg
ID egr:104419837
description protein trichome birefringence-like 12
nr
ID XP_012074558.1
description PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
swissprot
ID Q9FGE9
description Protein trichome birefringence-like 12 OS=Arabidopsis thaliana GN=TBL12 PE=2 SV=1
trembl
ID A0A067KLQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12930: 23164-23288 , PASA_asmbl_12931: 20954-24139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_030 0.0 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
2 Hb_001481_140 0.0646469711 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
3 Hb_006569_100 0.0713880243 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
4 Hb_001005_080 0.0715753869 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_005527_040 0.0797919174 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
6 Hb_000817_030 0.0798046774 - - mak, putative [Ricinus communis]
7 Hb_001904_090 0.0837081586 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
8 Hb_001396_100 0.0841287917 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000417_260 0.0870297797 - - protein with unknown function [Ricinus communis]
10 Hb_001008_090 0.0874471653 - - cytochrome C oxidase, putative [Ricinus communis]
11 Hb_011953_020 0.0879286259 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
12 Hb_001191_090 0.0922507577 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
13 Hb_002374_390 0.0936739128 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
14 Hb_000181_300 0.0936986916 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
15 Hb_001080_280 0.0938541522 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
16 Hb_004672_010 0.0955860386 - - ecotropic viral integration site, putative [Ricinus communis]
17 Hb_027654_050 0.0956812293 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
18 Hb_068056_030 0.0962694224 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
19 Hb_000123_170 0.0974372003 - - Rab3 [Hevea brasiliensis]
20 Hb_000122_020 0.0975506079 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_030 Hb_001519_030 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_003462_120 Hb_003462_120 Hb_001481_140--Hb_003462_120 Hb_004672_010 Hb_004672_010 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_068056_030 Hb_068056_030 Hb_006569_100--Hb_068056_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_006569_100--Hb_001008_090 Hb_001005_080--Hb_000417_260 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_005527_040--Hb_006569_100 Hb_005527_040--Hb_001005_080 Hb_004449_200 Hb_004449_200 Hb_005527_040--Hb_004449_200 Hb_005663_120 Hb_005663_120 Hb_005527_040--Hb_005663_120 Hb_000122_020 Hb_000122_020 Hb_005527_040--Hb_000122_020 Hb_027625_010 Hb_027625_010 Hb_000817_030--Hb_027625_010 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_001396_100 Hb_001396_100 Hb_001904_090--Hb_001396_100 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_006831_120 Hb_006831_120 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.62569 3.27223 4.30802 9.8057 4.27885 6.62452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4602 21.7017 23.2276 9.66712 6.00165

CAGE analysis